Locus 2720

Sequence ID 2L_DroMel_CAF1
Location 7,637,302 – 7,637,416
Length 114
Max. P 0.859168
window4329

overview

Window 9

Location 7,637,302 – 7,637,416
Length 114
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.34
Mean single sequence MFE -28.57
Consensus MFE -23.51
Energy contribution -25.32
Covariance contribution 1.81
Combinations/Pair 1.08
Mean z-score -1.93
Structure conservation index 0.82
SVM decision value 0.82
SVM RNA-class probability 0.859168
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7637302 114 + 22407834
UUUUUGUGACAUUUUCCGUAUUAAAAACGUUUUAAAAAACAACAAACAUGCAGAUUUAGAUGCCGAGGGUUGAUUU-CC-----GGGCAACAGCAUCCGUGUUAAAAUCUCUGCUCAGAA
((((((.(((.((((........)))).))).))))))...........(((((....(.((((..(((......)-))-----.)))).)((((....))))......)))))...... ( -19.70)
>DroPse_CAF1 170162 120 + 1
UUUUUGUGACGUUUUUCGUAUUAAAAACGUUUUAAAAAACAACAAACAUGCAGAUUUAGAUGCCGAGGGUUGAUGGUCCACGAGGACCGACAGCAUCCGCGUUAAAAUCUCUGCUCAAAA
((((((.(((((((((......))))))))).))))))...........((((((((.(((((.((..((((.((((((....)))))).)))).)).))))).)))..)))))...... ( -37.90)
>DroAna_CAF1 142848 114 + 1
UUUUUGUGACAUUUUUCGUAUUAAAAACGUUUUAAAAAAUAACAAACAUGCAGAUUUAGAUGCCAAGGGAUGAUUU-CC-----GGCCAACAGCAUCCGCGUUAAAAUCUCCGCUCAGAA
((((((.(((.(((((......))))).))).))))))...........((((((((.(((((...((((....))-))-----.((.....))....))))).))))))..))...... ( -18.80)
>DroPer_CAF1 166044 120 + 1
UUUUUGUGACGUUUUUCGUAUUAAAAACGUUUUAAAAAACAACAAACAUGCAGAUUUAGAUGCCGAGGGUUGAUGGUCCACGAGGACCGACAGCAUCCGCGUUAAAAUCUCUGCUCAAAA
((((((.(((((((((......))))))))).))))))...........((((((((.(((((.((..((((.((((((....)))))).)))).)).))))).)))..)))))...... ( -37.90)
>consensus
UUUUUGUGACAUUUUUCGUAUUAAAAACGUUUUAAAAAACAACAAACAUGCAGAUUUAGAUGCCGAGGGUUGAUGG_CC_____GACCAACAGCAUCCGCGUUAAAAUCUCUGCUCAAAA
((((((.(((((((((......))))))))).))))))...........((((((((.(((((.((..((((.(((((......))))).)))).)).))))).))))))..))...... (-23.51 = -25.32 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:36 2006