| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,627,957 – 7,628,054 |
| Length | 97 |
| Max. P | 0.777789 |
| Location | 7,627,957 – 7,628,054 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 62.83 |
| Mean single sequence MFE | -27.39 |
| Consensus MFE | -10.88 |
| Energy contribution | -11.50 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7627957 97 + 22407834 UGUCCACUUGCCC-----ACUUUCGAUGUGGGU--------CAUCUAAUGGCACACAAAUUGGAUUAACGCAUUGCCAUUGC----------AUUACCCUGAACAUCGGGAUCGGGCCAU .........((((-----..(..((((((((((--------.((.((((((((....................)))))))).----------)).))))...))))))..)..))))... ( -32.05) >DroPse_CAF1 161389 113 + 1 CCUCCCCCUCCUCCUUGGAGC-ACUAUGUGGGUCAACGGGCCAUCUAAUGGCACACAAAUUGGAUUAACACAUAGCUGGCAACCUCACCCUCCCCACCCUCCCCAUC------AAAGCAA .......((((.....))))(-((((((((((((....))))(((((((.........)))))))...))))))).)).............................------....... ( -23.30) >DroAna_CAF1 124559 99 + 1 UGCCCGAUUGACC-----AGCUUGAAUGUGGGU--------CAUCUAAUGGCACACAAAUUGGAUUAACACAUUGCUGACGAGUCGGACG--ACUCCCCUUAACAUC------GGUCCAU ...(((((.(..(-----(((...((((((...--------.(((((((.........)))))))...))))))))))..(((((....)--)))).......))))------))..... ( -27.00) >DroPer_CAF1 157428 103 + 1 CCUCCUCCUCCUCCUUGGAGC-UCUAUGUGGGUCAACGGGCCAUCUAAUGGCACACAAAUUGGAUUAACACAUAGCUGGC----------UCCCCACCCUCCCCAUC------AAAGCAA ................(((((-((((((((((((....))))(((((((.........)))))))...)))))))..)))----------)))..............------....... ( -27.20) >consensus CCUCCACCUCCCC_____AGC_UCUAUGUGGGU________CAUCUAAUGGCACACAAAUUGGAUUAACACAUAGCUGGCGA__________ACCACCCUCAACAUC______AAACCAA .......................(((((((((((....))))(((((((.........)))))))...)))))))............................................. (-10.88 = -11.50 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:33 2006