Locus 2716

Sequence ID 2L_DroMel_CAF1
Location 7,626,463 – 7,626,555
Length 92
Max. P 0.634087
window4323

overview

Window 3

Location 7,626,463 – 7,626,555
Length 92
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 87.96
Mean single sequence MFE -12.97
Consensus MFE -11.74
Energy contribution -11.77
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -1.34
Structure conservation index 0.91
SVM decision value 0.21
SVM RNA-class probability 0.634087
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7626463 92 + 22407834
AUCUAUGAAAAUAUUCAUGGCAAGUUGCAUAAAUAAUCCGCCUAGCACUUCAAAUUGAUAAAGACAAUUUACAAUUUAUACAAUGCAC--ACAG--------------------------
..(((((((....)))))))...(((((((.........((...)).....((((((.((((.....)))))))))).....))))).--))..-------------------------- ( -13.70)
>DroSec_CAF1 126219 92 + 1
AUCUAUGAAAAUAUUCAUGGCAAGUUGCAUAAAUAAUCCGCCUAGCACUUCAAAUUGAUAAAGACAAUUUACAAUUUAUACAAUGCAC--ACAG--------------------------
..(((((((....)))))))...(((((((.........((...)).....((((((.((((.....)))))))))).....))))).--))..-------------------------- ( -13.70)
>DroSim_CAF1 132125 92 + 1
AUCUAUGAAAAUAUUCAUGGCAAGUUGCAUAAAUAAUCCGCCUAGCACUUCAAAUUGAUAAAGACAAUUUACAAUUUAUACAAUGCAC--ACAG--------------------------
..(((((((....)))))))...(((((((.........((...)).....((((((.((((.....)))))))))).....))))).--))..-------------------------- ( -13.70)
>DroYak_CAF1 129541 94 + 1
AUCUAUGAAAAUAUUCAUGGCAAGCUGCAUAAAUAAUCCGCCUAGCACUUCAAAUUGAUAAAGACAAUUUACAAUUUAUACAAUGCACACACAG--------------------------
..(((((((....)))))))...(.(((((.........((...)).....((((((.((((.....)))))))))).....))))))......-------------------------- ( -12.80)
>DroAna_CAF1 123038 90 + 1
AUCUAUGAAAAUAUUCAUGGCAAGUUGCAUAAAUAAUCCGCCUAGCACUUCAAAUUGAUAAAGACAAUUUACAGUUUAUACAAUGCAC----AA--------------------------
..(((((((....)))))))...((.((((.........((...)).....((((((.((((.....)))))))))).....))))))----..-------------------------- ( -12.80)
>DroPer_CAF1 156506 118 + 1
AUCUAUGAAAAUAUUCAUGGCAAGUUGCAUAAAUAAUCCGCCCAGCACUUCAAAUUGAUAAAGACAAUUUACAAUUUAUACAAUACAC--AGACGUUGUCCCCCCUCCCUCUCCCCCCCU
..(((((((....)))))))...((((.((((((.....((...)).....((((((.......))))))...)))))).))))....--.............................. ( -11.10)
>consensus
AUCUAUGAAAAUAUUCAUGGCAAGUUGCAUAAAUAAUCCGCCUAGCACUUCAAAUUGAUAAAGACAAUUUACAAUUUAUACAAUGCAC__ACAG__________________________
..(((((((....))))))).....(((((.........((...)).....((((((.((((.....)))))))))).....)))))................................. (-11.74 = -11.77 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:30 2006