Locus 2715

Sequence ID 2L_DroMel_CAF1
Location 7,624,425 – 7,624,543
Length 118
Max. P 0.893054
window4322

overview

Window 2

Location 7,624,425 – 7,624,543
Length 118
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 86.66
Mean single sequence MFE -41.68
Consensus MFE -30.72
Energy contribution -30.08
Covariance contribution -0.64
Combinations/Pair 1.24
Mean z-score -2.23
Structure conservation index 0.74
SVM decision value 0.97
SVM RNA-class probability 0.893054
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7624425 118 + 22407834
GCAACAACAUUUUGUCCUUGUGUAGAAAGGAUGAUA-UCCCGUCGAACCAGCUGGUAGGCGGUACGCUGCCACGCUUCGUCAGCGGACAGCGGAGCGUGCCGAAUACCAUUUGAUGGAU
...........(..(((((.......)))))..)..-..((((((((.....(((((..(((((((((.((.(..((((....))))..).)))))))))))..))))))))))))).. ( -46.60)
>DroSec_CAF1 124182 118 + 1
CCAACAACUUUUUGUCCUUGUGUAGAAAGGAUGAUA-UCCAGUCGAACCAGCUGGUAGGCGGUACUCUGCUACGCUUCGUCAGCGGACAGCGGAGCGUGCCGAAUACCAUUUGAUGGAU
...........(..(((((.......)))))..).(-((((.(((((.....(((((..((((((((((((.((((.....))))...))))))..))))))..))))))))))))))) ( -42.90)
>DroSim_CAF1 130084 118 + 1
GCAACAACUUUUUGUCCUUGUGUAGAAAGGAUGAUA-UCCAGUCGAACCAGCUGGUAGGCGGUACUCUGCCACGCUUCGUCAGCGGACAGCGGAGCGUGCCGAAUACCAUUUGAUGGAU
...........(..(((((.......)))))..).(-((((.(((((.....(((((..(((((((((((..((((.....))))....)))))..))))))..))))))))))))))) ( -41.20)
>DroYak_CAF1 127341 118 + 1
GUAUCAUCCUUUUGUCCUUGUGUAGAAAGGAUGAUA-UCCGGUCGAACCAGCUGGUAGGCGGUACUCUGCCACGCUUCGUCAGCGGAAAGCGGAGCGUGCCGAAUUUGAUUUGAUGGAU
.((((((((((((...(....)..))))))))))))-((((.(((((.(((.((((.(((((....)))))(((((((((.........)))))))))))))...))).))))))))). ( -45.40)
>DroAna_CAF1 121017 119 + 1
AACUCACUUUUUUUUCUUUGUGUAAAAAGGAUACUGCUCUAGUUGAACCAGCUGGUAGGCGUUCCUUUGACACGCUCCGUCAACAGAAAAUGUAGCAUGCCGAAUGCCAUUUGAUGGAU
...................((((..((((((...(((((((((((...)))))))..)))).)))))).))))..((((((((((.....))).((((.....))))....))))))). ( -32.30)
>consensus
GCAACAACUUUUUGUCCUUGUGUAGAAAGGAUGAUA_UCCAGUCGAACCAGCUGGUAGGCGGUACUCUGCCACGCUUCGUCAGCGGACAGCGGAGCGUGCCGAAUACCAUUUGAUGGAU
...........((((((((.......))))))))...(((.((((((((....))).((((((.....)))(((((((((.........)))))))))))).........)))))))). (-30.72 = -30.08 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:29 2006