Locus 2713

Sequence ID 2L_DroMel_CAF1
Location 7,622,999 – 7,623,090
Length 91
Max. P 0.850738
window4319

overview

Window 9

Location 7,622,999 – 7,623,090
Length 91
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.22
Mean single sequence MFE -21.50
Consensus MFE -12.51
Energy contribution -13.82
Covariance contribution 1.31
Combinations/Pair 1.18
Mean z-score -1.87
Structure conservation index 0.58
SVM decision value 0.79
SVM RNA-class probability 0.850738
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7622999 91 + 22407834
CUUUAUCGAUUGCAAUCAAC-----UUUC-CCUCGG-------CGAGC-----GGCUCUAUUAUCUCUGCGGUUG----------UU-UUAUCACCGCAUUGCAAUCUUUUGUGAAGCGA
((((((.(((((((((....-----...(-((((..-------.))).-----)).............(((((.(----------..-....)))))))))))))))....))))))... ( -21.90)
>DroPse_CAF1 155405 113 + 1
CACUCCUGAUUGCAAUCAACGCAGUUUUC-CCCCUCCCUCUCUCUCUC-----UCCUUUAUUAUCUCUGCGGUUCUGCGGUGGGUUU-UUAUCUCGACAUUGCAAUCUUUUGUGCCGCAA
(((....(((((((((...(((((....(-(.................-----.................))..)))))(((((...-....))).)))))))))))....)))...... ( -21.08)
>DroSec_CAF1 122433 91 + 1
CUUUACCGAUUGCAAUCAAC-----UUUC-CCUCGG-------CGAGC-----AGCUCUAUUAUCUCUGCGGUUG----------UU-UUAUCAGCGCAUUGCAAUCUUUUGUGAAGCGA
((((((.((((((((((...-----....-......-------...((-----((...........)))).((((----------..-....))))).)))))))))....))))))... ( -21.00)
>DroSim_CAF1 128354 91 + 1
CUUUACCGAUUGCAAUCAAC-----UUUC-CCUCGG-------CGGGC-----AGCUCUAUUAUCUCUGCGGUUG----------UU-UUAUCACCGCAUUGCAAUCUUUUGUGAAGCGA
((((((.(((((((((....-----...(-((....-------.))).-----...............(((((.(----------..-....)))))))))))))))....))))))... ( -24.20)
>DroYak_CAF1 125593 92 + 1
CUUUACAGAUUGCAAUCAAC-----UUUCCCCUUGG-------CGAGC-----AGCUCUAUUAUCUCUGCGGUUG----------UU-UUAUCACCGCAUUGCAAUCUUUUGUGAAGCGC
((((((((((((((((....-----.........((-------(....-----.)))...........(((((.(----------..-....)))))))))))))))...)))))))... ( -24.90)
>DroAna_CAF1 119225 97 + 1
GUUUCCCGAUUGCAAUCAAC-----UUUC-CCUCAU-------UCAUUAUUUGGUCUUUAUUAUCUCUGUGGUUG----------UUUUUAUCACCGCAUUGCGAUCUUUUGUACUGCAA
.......(((((((((....-----....-((....-------.........))..............(((((.(----------(....)).))))))))))))))............. ( -15.92)
>consensus
CUUUACCGAUUGCAAUCAAC_____UUUC_CCUCGG_______CGAGC_____AGCUCUAUUAUCUCUGCGGUUG__________UU_UUAUCACCGCAUUGCAAUCUUUUGUGAAGCGA
.......(((((((((............................((((......))))..........((((......................)))))))))))))............. (-12.51 = -13.82 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:26 2006