Locus 2712

Sequence ID 2L_DroMel_CAF1
Location 7,621,043 – 7,621,150
Length 107
Max. P 0.536344
window4318

overview

Window 8

Location 7,621,043 – 7,621,150
Length 107
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 77.68
Mean single sequence MFE -25.70
Consensus MFE -15.98
Energy contribution -16.30
Covariance contribution 0.32
Combinations/Pair 1.18
Mean z-score -1.58
Structure conservation index 0.62
SVM decision value 0.01
SVM RNA-class probability 0.536344
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7621043 107 - 22407834
CUCCGAUCGGCGUCUGUCAUGCAUCAUUAGCGGUCUCAA-AGGCGACCGAUCUGGGUCCAAUAUCCGUGCAUAUAUGGCAUGUACUAGUAUAUAUGUAUAUGUACAUA
(((.(((((((((((....(((.......))).......-))))).)))))).)))..........(((((((((((..(((((....))))).)))))))))))... ( -34.90)
>DroSec_CAF1 120543 94 - 1
CUCCGAUCGGCGUCUGUCAUGCAUCAUUAGCGGUCUCAA-AGGCGACCGAUCUGGGUCCAAUAUCCGUGCAUAUAUGGCAUGUA---------AGGUAUAUG----UA
(((.(((((((((((....(((.......))).......-))))).)))))).)))....((((((((((.......)))))..---------.)))))...----.. ( -27.00)
>DroSim_CAF1 126482 83 - 1
CUCCGAUCGGCGUCUGUCAUGCAUCAUUAGCGGUCUCAA-AGGCGACCGAUCUGGGUCCAAUAUCCGUGCAUAUAUGGCAUG------------------------UA
(((.(((((((((((....(((.......))).......-))))).)))))).))).........(((((.......)))))------------------------.. ( -25.30)
>DroYak_CAF1 123612 90 - 1
CUCCGAUCGGCGUCUGUCAUGCAUCAUUAGCGCUCUCAA-AGGCGACCGAUCUGGGUCCAAUAUCCGUGCAUAUAUA-----UACAAG--------UAUCUA----UA
(((.(((((((((((.....((.........))......-))))).)))))).)))...............((((.(-----((....--------))).))----)) ( -20.10)
>DroAna_CAF1 116815 89 - 1
CUCCGAUCAACGUCUGUCAUGCAUCAUUAGUGGUCUCAAAAGGCGACCGAUC--GAACCAAUAUACUCGUAUAUAGGUUCUC-----C--------CAUACA----UA
....((((..(((((.....(.((((....))))).....)))))...))))--(((((.(((((....))))).)))))..-----.--------......----.. ( -21.20)
>consensus
CUCCGAUCGGCGUCUGUCAUGCAUCAUUAGCGGUCUCAA_AGGCGACCGAUCUGGGUCCAAUAUCCGUGCAUAUAUGGCAUGUA____________UAUAUA____UA
.((((((((((((((....(((.......)))........))))).)))))).)))........(((((....))))).............................. (-15.98 = -16.30 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:25 2006