Locus 2711

Sequence ID 2L_DroMel_CAF1
Location 7,617,727 – 7,617,838
Length 111
Max. P 0.617886
window4317

overview

Window 7

Location 7,617,727 – 7,617,838
Length 111
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.93
Mean single sequence MFE -18.82
Consensus MFE -15.29
Energy contribution -15.82
Covariance contribution 0.53
Combinations/Pair 1.06
Mean z-score -1.38
Structure conservation index 0.81
SVM decision value 0.17
SVM RNA-class probability 0.617886
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7617727 111 - 22407834
AAGACGAUUAAUAUCACUUAAUUAAGGUGAAAAUGUAGAUGCCUGACAGCUGUCAAAA----GCGUAUGAAACGUAUCGAAUGGCAGCAGAGCAACAACAAC-----AAAAAAAAGAGUA
...((........((((((.....))))))...(((.(.(((((....(((((((...----((((.....))))......))))))))).))).).)))..-----..........)). ( -21.10)
>DroSec_CAF1 117236 105 - 1
AAGACGAUUAAUAUCACUUAAUUAAGGUGAAAAUUUAGAUGCCUGACAGCUGUCAAAA----GCGUAUGAAACGUAUCAAAUGACAGCAGAGCAAC-----------ACAAAAUAGAGUA
.....(((....)))((((.(((...(((.....((((....))))..(((((((...----((((.....))))......))))))).......)-----------))..))).)))). ( -19.90)
>DroEre_CAF1 117440 102 - 1
AAGACGAUUAAUAUCACUUAAUUAAGGUGAAAAUGUAGAUGCCUGACAGCUGUCAAAA----GCGUAUGAAACGUAUCGGAUGGCAGCAGACCGACA--------------AAAAAAGUA
....((.......((((((.....))))))............(((...((((((....----((((.....))))....))))))..)))..))...--------------......... ( -19.20)
>DroYak_CAF1 120167 116 - 1
AAGACGAUUAAUAUCACUUAAUUAAGGUGAAAAUGUAGAUGCCUGACAGCUGUCAAAA----GCGUAUGAAACGUAUCGAAUGGCAGCAGACCAACAACAAAAAAGAAAAAAAAAAAGUA
.............((((((.....))))))...(((((....)).)))(((((((...----((((.....))))......)))))))................................ ( -17.60)
>DroAna_CAF1 113339 96 - 1
AAGACGAUUAAUAUCACUUAAUUAAGGUGAAAAUGUAGAUGCCCGACAGCUGUCAAAA----GCGUAUGAAACGUAUCAAAUGGCAG--------------------ACAAAAAAGUGCA
...((........((((((.....))))))...(((...((((.(((....)))....----((((.....)))).......)))).--------------------))).....))... ( -18.30)
>DroPer_CAF1 146601 98 - 1
ACGACGAUUAAUAUCACUUAAUUAAGGUGAAAAUUUAGAUGCCCGACAGCUGUCAGAAAGCGGCCUAUGAAACGUAUCAAAUGGCAU----------------------AAAAUACUCUG
.............((((((.....))))))........(((((.....(((((......)))))...(((......)))...)))))----------------------........... ( -16.80)
>consensus
AAGACGAUUAAUAUCACUUAAUUAAGGUGAAAAUGUAGAUGCCUGACAGCUGUCAAAA____GCGUAUGAAACGUAUCAAAUGGCAGCAGA_CAAC___________A_AAAAAAGAGUA
.............((((((.....))))))..................(((((((.......((((.....))))......)))))))................................ (-15.29 = -15.82 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:24 2006