| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,617,486 – 7,617,593 |
| Length | 107 |
| Max. P | 0.637495 |
| Location | 7,617,486 – 7,617,593 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 82.74 |
| Mean single sequence MFE | -24.65 |
| Consensus MFE | -16.70 |
| Energy contribution | -17.40 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.637495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7617486 107 - 22407834 UGGGCCCGGAACAAUGACAGCAAUCAAAUCGCAUUUGCCGUUAUGCCAAAAGCGGAUUUUUGAUGGCAAUCAAUCAGAAA-UGUGCCCCGCA----------AAAAAAAAAUGAAACG .(((...((....(((((.((((...........)))).))))).))....(((.(((((((((........))))))))-).))))))...----------................ ( -26.40) >DroSec_CAF1 117002 101 - 1 UGGGCCCGGAACAAUGACAGCAAUCAAAUCGCAUUUGCCGUUAUGCCAAAAGCGGAUUUUUGAUGGCAAUCAAUCAGAAA-UGUG----------------AAAAAAAAAACCAAACG (((....((....(((((.((((...........)))).))))).)).....((.(((((((((........))))))))-).))----------------..........))).... ( -21.80) >DroSim_CAF1 122939 117 - 1 UGGGCCCGGAACAAUGACAGCAAUCAAAUCGCAUUUGCCGUUAUGCCAAAAGCGGAUUUUUGAUGGCAAUCAAUCAGAAA-UGUGCCCCGCAAAAAAAAAAAAGAAAAAAACGAAACC .(((...((....(((((.((((...........)))).))))).))....(((.(((((((((........))))))))-).))))))............................. ( -26.40) >DroEre_CAF1 117208 99 - 1 UGGGUCCGGAACAAUGACAGCAAUCAAAUCGCAUUUGCCGUUAUGCCAAAAGCGGAUUUUUGAUGGCAAUCAAUCAGAAA-UGUGCCC--------------G----AAAAAAAAACG .((....((....(((((.((((...........)))).))))).))....(((.(((((((((........))))))))-).)))))--------------.----........... ( -24.00) >DroYak_CAF1 119914 118 - 1 UGGGUCCGGAACAAUGACAGCAAUCAAAUCGCAUUUGCCGUUAUGCCAAAAGCGGAUUUUUGAUGCCAAUCAAUCAGAAAGUGGGCCCCGCAAAAAAAAAACGAAAAAAAAAGAAACG .((((((((....(((((.((((...........)))).))))).)).........((((((((........))))))))..)))))).............................. ( -27.10) >DroAna_CAF1 113092 108 - 1 UGCUUGUGGAACAAUGACAGCAAUCAAAUCGCAUUUGCCGUUAUGCCAAAAGCGGAUUUUUGAUGGCAAUCAAUCAGAAA-AGACCCCCGAA--AAAAAACCAGA-A------AAUCA .((((.(((....(((((.((((...........)))).))))).))).))))((.((((((((........))))))))-...))......--...........-.------..... ( -22.20) >consensus UGGGCCCGGAACAAUGACAGCAAUCAAAUCGCAUUUGCCGUUAUGCCAAAAGCGGAUUUUUGAUGGCAAUCAAUCAGAAA_UGUGCCCCGCA__________AAAAAAAAAAGAAACG .((((.(((....(((((.((((...........)))).))))).)).........((((((((........))))))))..).)))).............................. (-16.70 = -17.40 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:23 2006