Locus 271

Sequence ID 2L_DroMel_CAF1
Location 781,958 – 782,075
Length 117
Max. P 0.973580
window432 window433

overview

Window 2

Location 781,958 – 782,075
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.36
Mean single sequence MFE -32.20
Consensus MFE -21.40
Energy contribution -20.93
Covariance contribution -0.47
Combinations/Pair 1.30
Mean z-score -2.12
Structure conservation index 0.66
SVM decision value 1.71
SVM RNA-class probability 0.973580
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 781958 117 + 22407834
GCAGUACUUCCUGCAGCCGGACUUCCGGCUGUGGUACACAUUCGCCUACUACCCCAUCAUCGCCAUGCUCAACUGCUUCUGCAGCUUGUGGUGAGUAGCUGU---CCUAUGGCAAAAACA
...(((((....((((((((....)))))))))))))......(((.............((((((....(((((((....)))).)))))))))((((....---.)))))))....... ( -40.00)
>DroPse_CAF1 38609 91 + 1
GCAGUACUUCCUGCAGCCGGACUUCCGGCUGUGGUACACCUUCGCCUACUACCCCAUCAUCGCGAUGCUGAACUGCUUCUGCAGUCUGUGG-----------------------------
((((((((....((((((((....)))))))))))))....((((................)))))))...(((((....)))))......----------------------------- ( -31.89)
>DroEre_CAF1 42002 112 + 1
GCAGUACUUCCUGCAGCCGGACUUCCGGCUGUGGUACACAUUCGCCUACUACCCCAUCAUCGCCAUGCUCAACUGCUUCUGCAGUUUGUGGUGAGCACCU--------AUGGUAAAACCA
((.(((((....((((((((....)))))))))))))......................((((((((...((((((....))))))))))))))))....--------.(((.....))) ( -40.90)
>DroMoj_CAF1 60504 91 + 1
GCAGUAUUUUCUGCAGCCCGAUUUUCGCUUAUGGUACACCUUCGCCUAUUAUCCAAUCAUCGCGAUGCUGAAUUGUUUCUGCAGCCUGUGG-----------------------------
((((......((((((..((((((..((....((....)).((((................)))).)).))))))...)))))).))))..----------------------------- ( -18.39)
>DroAna_CAF1 42639 118 + 1
CCAGUAUUUCCUCCAGCCGGACUUCCGGUUGUGGUAUACCUUCGCCUACUACCCCAUCAUCGCCAUGCUCAACUGCUUCUGCAGCCUGUGGUGUGUAUAGGAUCUUCUCCAGC--AACCU
...((((..((..(((((((....))))))).)).))))....((............((.((((((......((((....))))...))))))))....(((.....))).))--..... ( -31.30)
>DroPer_CAF1 41793 91 + 1
GCAGUACUUCCUGCAGCCGGACUUCCGGCUGUGGUACACCUUCGCCUACUACCCCAUCAUCGCGAUGCUGAACUGCUUCUGCAGCCUGUGG-----------------------------
((((((((....((((((((....)))))))))))))....((((................)))))))....((((....)))).......----------------------------- ( -30.69)
>consensus
GCAGUACUUCCUGCAGCCGGACUUCCGGCUGUGGUACACCUUCGCCUACUACCCCAUCAUCGCCAUGCUCAACUGCUUCUGCAGCCUGUGG_____________________________
...(((((....((((((((....)))))))))))))........((((............((...))....((((....))))...))))............................. (-21.40 = -20.93 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

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Window 3

Location 781,958 – 782,075
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.36
Mean single sequence MFE -33.52
Consensus MFE -22.97
Energy contribution -24.08
Covariance contribution 1.11
Combinations/Pair 1.10
Mean z-score -1.18
Structure conservation index 0.69
SVM decision value 0.35
SVM RNA-class probability 0.699973
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 781958 117 - 22407834
UGUUUUUGCCAUAGG---ACAGCUACUCACCACAAGCUGCAGAAGCAGUUGAGCAUGGCGAUGAUGGGGUAGUAGGCGAAUGUGUACCACAGCCGGAAGUCCGGCUGCAGGAAGUACUGC
....((((((.((..---((..((((((.(((..((((((....)))))).....))).)).).))).))..)))))))).(((...)))((((((....))))))((((......)))) ( -37.60)
>DroPse_CAF1 38609 91 - 1
-----------------------------CCACAGACUGCAGAAGCAGUUCAGCAUCGCGAUGAUGGGGUAGUAGGCGAAGGUGUACCACAGCCGGAAGUCCGGCUGCAGGAAGUACUGC
-----------------------------((...((((((....))))))...((((.....))))))((.(((.((....)).))).))((((((....))))))((((......)))) ( -35.00)
>DroEre_CAF1 42002 112 - 1
UGGUUUUACCAU--------AGGUGCUCACCACAAACUGCAGAAGCAGUUGAGCAUGGCGAUGAUGGGGUAGUAGGCGAAUGUGUACCACAGCCGGAAGUCCGGCUGCAGGAAGUACUGC
........((((--------...(((.((.....((((((....)))))).....)))))...)))).((.(((.((....)).))).))((((((....))))))((((......)))) ( -38.10)
>DroMoj_CAF1 60504 91 - 1
-----------------------------CCACAGGCUGCAGAAACAAUUCAGCAUCGCGAUGAUUGGAUAAUAGGCGAAGGUGUACCAUAAGCGAAAAUCGGGCUGCAGAAAAUACUGC
-----------------------------...(((.((((((...(.(((((((((....))).)))))).....((...((....))....)).......)..))))))......))). ( -19.40)
>DroAna_CAF1 42639 118 - 1
AGGUU--GCUGGAGAAGAUCCUAUACACACCACAGGCUGCAGAAGCAGUUGAGCAUGGCGAUGAUGGGGUAGUAGGCGAAGGUAUACCACAACCGGAAGUCCGGCUGGAGGAAAUACUGG
...((--(((....(..(((((((.(((.(((..((((((....)))))).....))).).)))))))))..).))))).(((((.((.((.((((....)))).))..))..))))).. ( -36.50)
>DroPer_CAF1 41793 91 - 1
-----------------------------CCACAGGCUGCAGAAGCAGUUCAGCAUCGCGAUGAUGGGGUAGUAGGCGAAGGUGUACCACAGCCGGAAGUCCGGCUGCAGGAAGUACUGC
-----------------------------((...((((((....))))))...((((.....))))))((.(((.((....)).))).))((((((....))))))((((......)))) ( -34.50)
>consensus
_____________________________CCACAGGCUGCAGAAGCAGUUCAGCAUCGCGAUGAUGGGGUAGUAGGCGAAGGUGUACCACAGCCGGAAGUCCGGCUGCAGGAAGUACUGC
.............................(((((((((((....))))))..((...))..)).))).((.(((.((....)).))).))((((((....))))))((((......)))) (-22.97 = -24.08 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:42 2006