| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,572,084 – 7,572,174 |
| Length | 90 |
| Max. P | 0.904564 |
| Location | 7,572,084 – 7,572,174 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.03 |
| Mean single sequence MFE | -21.20 |
| Consensus MFE | -16.12 |
| Energy contribution | -17.01 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.26 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.904564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7572084 90 + 22407834 UAACAAACAUCAACAGCUGUUGGCAGACCGAGUUGCUCCGGUUUUCUAU----UUU-------------------UUUAU---UUUUUUGUGGGGCAACAACUUCUGUGAGAGCAA---- ...............(((.((.(((((....(((((((((.......((----...-------------------...))---.......)))))))))....))))).)))))..---- ( -21.84) >DroSec_CAF1 71812 92 + 1 UAACAAACAUAAACAGCUGUUGGCAGACCGAGUUGCUCCGGUUUUCUAU----UUU-------------------UUUUU-UUAUUUUUGUGGGGCAACCACUUCUGUGAGAGCAA---- ...............(((.((.(((((....(((((((((.........----...-------------------.....-.........)))))))))....))))).)))))..---- ( -21.67) >DroSim_CAF1 76839 93 + 1 UAACAAACAUCAACAGCUGUUGGCAGACCGAGUUGCUCCGGUUUUCUAU----UUU-------------------UUUUUUUUUUUUUUGUGGGGCAACAACUUCUGUGAGAGCAA---- ...............(((.((.(((((....(((((((((.........----...-------------------...............)))))))))....))))).)))))..---- ( -21.63) >DroEre_CAF1 71053 83 + 1 UAACAAACAUCAACAGCUGUUGGCAGACCGAGUUGCUCCGGUUUUCUAU----U-----------------------------UUUUUUGUGGGGCAACAACUUCUGUGAGAGCAA---- ...............(((.((.(((((....(((((((((.........----.-----------------------------.......)))))))))....))))).)))))..---- ( -22.13) >DroAna_CAF1 68485 120 + 1 UACCAAACAUCAACAGCUGCUGGCAGUUCAACUUGCCCCGGUUUUCUGGCCCGUUUGUUUUUUAAAUUUUUUUCUCUUUUUUUUCGUUUUUGGGGCAACAACUUUUGUGAGAGCCACCGC ...............(((.((.((((......(((((((((((....)))).(((((.....)))))........................)))))))......)))).)))))...... ( -25.00) >DroPer_CAF1 97734 68 + 1 CAACAAACGUUAACAGCUGUCGCU---UCUGGCUGUGCCGC---------------------------------------------UGUUUGGGGCAACAACUUUUUUAGGAGGAA---- ........(((.((((((......---...))))))(((.(---------------------------------------------.....).))))))..((((....))))...---- ( -14.90) >consensus UAACAAACAUCAACAGCUGUUGGCAGACCGAGUUGCUCCGGUUUUCUAU____UUU___________________UUUUU___UUUUUUGUGGGGCAACAACUUCUGUGAGAGCAA____ ...............(((.((.(((((....(((((((((..................................................)))))))))....))))).)))))...... (-16.12 = -17.01 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:05 2006