Locus 2699

Sequence ID 2L_DroMel_CAF1
Location 7,558,983 – 7,559,083
Length 100
Max. P 0.854290
window4289

overview

Window 9

Location 7,558,983 – 7,559,083
Length 100
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 86.12
Mean single sequence MFE -28.50
Consensus MFE -22.39
Energy contribution -23.59
Covariance contribution 1.20
Combinations/Pair 1.10
Mean z-score -2.90
Structure conservation index 0.79
SVM decision value 0.80
SVM RNA-class probability 0.854290
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7558983 100 + 22407834
CAAAUUGCAUUGCAAAUGCA-----AUUGAAAAAUGCAAUUUGCAAUUGUCGCCAAUCUC--CUUUGCACGCACGCGUGUGAUGCGUGUGCAGUUGACAAAUUCAAA
(((((((((((.(((.....-----.)))...)))))))))))...(((((((.((....--..))))..((((((((.....))))))))....)))))....... ( -31.80)
>DroSec_CAF1 58724 100 + 1
UAAAUUGCAUUGCAAAUGCA-----AUUGAAAAAUGCAAUUUGCAAUUGUCGCCAAUCUC--CUUUGCACGCACGCGUGUGAUGCGUGUGCAGUUGACAAAUUCAAA
(((((((((((.(((.....-----.)))...)))))))))))...(((((((.((....--..))))..((((((((.....))))))))....)))))....... ( -30.30)
>DroSim_CAF1 63434 100 + 1
UAAAUUGCAUUGCAAAUGCA-----AUUGAAAAAUGCAAUUUGCAAUUGUCGCCAAUCUC--CUUUGCACGCACGCGUGUGAUGCGUGUGCAGUUGACAAAUUCAAA
(((((((((((.(((.....-----.)))...)))))))))))...(((((((.((....--..))))..((((((((.....))))))))....)))))....... ( -30.30)
>DroEre_CAF1 57872 100 + 1
CAAAUUGCAUUGCAAAUGCA-----AUUGAAAAAUGCAAUUUGCAAUUGUCGCCGAUCUC--CUUUGCACGCACGCGUGUGAUGCGUGUGCAGUUGACAAAUUCAAA
(((((((((((.(((.....-----.)))...)))))))))))...(((((((.((....--.)).))..((((((((.....))))))))....)))))....... ( -31.80)
>DroWil_CAF1 62205 99 + 1
CGAAUUGCAUUCCAAAUGCAUUAAAAAUAAAAAAUGCAUUUUGCAAUUGUCUCGUCUCGUCUCUUUGAUCG--------UUUAGCAGCUGCAGCUGACAAAUUUGUU
..(((((((....(((((((((..........))))))))))))))))..........(((.....))).(--------(((..((((....))))..))))..... ( -19.20)
>DroYak_CAF1 59903 100 + 1
CAAAUUGCAUUGCAAAUGCA-----AUUGAAAAAUGCAAUUUGCAAUUGUCGCCGAUCUC--CUUUGCACGCACGAGUGUGAUGCGUGUGCAGUUGACAAAUUCAAA
(((((((((((.(((.....-----.)))...)))))))))))((((((.(((((.....--..(..(((......)))..)..)).)))))))))........... ( -27.60)
>consensus
CAAAUUGCAUUGCAAAUGCA_____AUUGAAAAAUGCAAUUUGCAAUUGUCGCCAAUCUC__CUUUGCACGCACGCGUGUGAUGCGUGUGCAGUUGACAAAUUCAAA
(((((((((((.(((...........)))...)))))))))))...(((((((.............))..((((((((.....))))))))....)))))....... (-22.39 = -23.59 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:58 2006