Locus 2697

Sequence ID 2L_DroMel_CAF1
Location 7,554,245 – 7,554,344
Length 99
Max. P 0.667668
window4287

overview

Window 7

Location 7,554,245 – 7,554,344
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 91.31
Mean single sequence MFE -29.54
Consensus MFE -23.06
Energy contribution -23.26
Covariance contribution 0.20
Combinations/Pair 1.23
Mean z-score -1.60
Structure conservation index 0.78
SVM decision value 0.28
SVM RNA-class probability 0.667668
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7554245 99 - 22407834
CCUGGGAAGAGAUCAUUGAGUCCGCGGCUCUUUGGAGCCUAAGGAUUGCCAUGGAAUAUCAGACUCAGUUCGAGGAACCCAGCUAUUUUAGUAAAUAUA
.(((((..((..((((.((((((..(((((....)))))...))))).).))))....))...(((.....)))...)))))................. ( -27.80)
>DroSec_CAF1 53989 99 - 1
CCUGGGAAGAGAUCUUUGAGUCCGCGGCUCUUUGGAGCCUAAGGAUUGCCAUGGAAUAUCAGGCUCAGUUCAGAGAACCCAGCUAUUUUAGUAAAUAUA
.(((((......(((((((((((..(((((....)))))...)))).(((.((......))))).....))))))).)))))................. ( -30.20)
>DroSim_CAF1 58643 99 - 1
CCUGGGAAGAGAUCUUUGAGUCCGCGGCUCUUUGGAGCCUAAGGAUUGCCAUGGAAUAUCAGGCUCAGUUCAGAGAACCCAGAUAUUUUAGUAAAUAUA
.(((((......(((((((((((..(((((....)))))...)))).(((.((......))))).....))))))).)))))((((((....)))))). ( -32.00)
>DroEre_CAF1 53129 99 - 1
CCUGGGAAGAGAUCUUUGAGUCCGGGGCUCUUUGGAGCCUAAGGAUUGAAACGGAAUAUCAGGUUCAGUUCAGGGAGCCUUGCUGUUUUAGUAACUAUA
((((((.(((....)))...))).((((((....)))))).)))((((((((((......((((((........))))))..))))))))))....... ( -29.80)
>DroYak_CAF1 55317 99 - 1
CCUGGGAAGAGAUCUUUGAGUCUGGGGCUCUUUGGAGCCUAAGGAUUGCCAUGGAAUAUCAGGUUCAGUUCGGGGAGCCUUGCUAUUUUAGUAAAUAUU
..(((((((....)))).(((((.((((((....))))))..))))).)))(((((((.(((((((........))))).)).)))))))......... ( -27.90)
>consensus
CCUGGGAAGAGAUCUUUGAGUCCGCGGCUCUUUGGAGCCUAAGGAUUGCCAUGGAAUAUCAGGCUCAGUUCAGGGAACCCAGCUAUUUUAGUAAAUAUA
.(((((......(((((((((((..(((((....)))))...)))).(((.((......))))).....))))))).)))))................. (-23.06 = -23.26 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:56 2006