Locus 2696

Sequence ID 2L_DroMel_CAF1
Location 7,543,638 – 7,543,737
Length 99
Max. P 0.685736
window4286

overview

Window 6

Location 7,543,638 – 7,543,737
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 90.57
Mean single sequence MFE -26.39
Consensus MFE -20.98
Energy contribution -21.37
Covariance contribution 0.39
Combinations/Pair 1.10
Mean z-score -2.51
Structure conservation index 0.80
SVM decision value 0.32
SVM RNA-class probability 0.685736
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7543638 99 + 22407834
UUGGCAGGCAGACGGGGCUAAUUAGGGCCCACUGCACAUUCAAAUGGCGAAUCAAACAAUUUGCAUAAUUUUUGCAUAUGUCACAAAACGACAUAAAGA
...((((((((...(((((......))))).))))...........((((((......)))))).......)))).((((((.......)))))).... ( -28.60)
>DroSec_CAF1 45735 99 + 1
UUGGCAAGCAGUCGGGGCUAAUUAGGGCCCACUGCACAUUCAAAUGGCGAAUCAAACAAUUUGCAUAAUUUUUGCAUAUGUCACAAAGCGACAUAAAGC
...(((((((((.(((.((.....)).))))))))...........((((((......)))))).......)))).((((((.......)))))).... ( -29.60)
>DroSim_CAF1 50220 99 + 1
UUGGCAAGCAGACGGGGCUAAUUAGGGCCCACUGCACAUUCAAAUGGCGAAUCAAACAAUUUGCAUAAUUUUUGCAUAUGUCACAAAGCGACAUAAAGC
...((((((((...(((((......))))).))))...........((((((......)))))).......)))).((((((.......)))))).... ( -29.10)
>DroEre_CAF1 44908 99 + 1
UUGGCAGGCAGACAGGGCUAAUUAAGGCCCAUUCCCCAUACAAAUGGCGAUUCAAACAAUUUGCAUAAUUUUUGCAUAUGUCACAAAGCGACAUAAAGA
...(((((((((..(((((......)))))..((.((((....)))).)).........))))).......)))).((((((.......)))))).... ( -23.81)
>DroYak_CAF1 46062 99 + 1
UUGGCAGGCAGACGGGGCUAAUUAAGGCCCAUUCCGCAUACAAAUGGCGAAUCAAACAAUUUGCAUAAUUUUUGCAUAUGUCACAGAGCGACAUAAAGA
...((((((.((..(((((......)))))..)).)).........((((((......)))))).......)))).((((((.......)))))).... ( -26.20)
>DroAna_CAF1 43800 99 + 1
UUGACAGCCAUACAGGGCUAAUUAGGGCCCAUUUCAAAUUCAAAUGGCAAAUCAAAUAAUUUGCAUAAUUUUUGCAUAUGUCACAGAGGGACACAAAAG
.((((((((((...(((((......))))).((........))))))).............((((.......))))..)))))................ ( -21.00)
>consensus
UUGGCAGGCAGACGGGGCUAAUUAGGGCCCACUGCACAUUCAAAUGGCGAAUCAAACAAUUUGCAUAAUUUUUGCAUAUGUCACAAAGCGACAUAAAGA
.(((((.(((((..(((((......)))))................((((((......))))))......)))))...)))))................ (-20.98 = -21.37 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:55 2006