| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,540,086 – 7,540,202 |
| Length | 116 |
| Max. P | 0.520917 |
| Location | 7,540,086 – 7,540,202 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 84.46 |
| Mean single sequence MFE | -31.50 |
| Consensus MFE | -23.96 |
| Energy contribution | -24.68 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.76 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.520917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7540086 116 - 22407834 UUU-CUCCAAGGCGUCGGAGAAAACUUUUCCGGCAAAUUUGUGGCUAAUUUAUGAGACCAACACAGGUAGAAAGAAGAAAUGGGAAAUGAGCUGAGUCUAGAAAGGCUUGGCUGUAC (((-(.(((....((((((((.....))))))))..(((((((.((........)).....)))))))............)))))))..(((..(((((....)))))..))).... ( -33.30) >DroSec_CAF1 42252 116 - 1 UUU-UUCCAAGGCGUCGGAGAAAACUUUUCCGGCAAAUUUGUGGCUAAUUUAUGAGACCAACACAGGUAGAAAGAAGAAAAGGGAAAUGAGCUGAGUCUAGAACGGCUUGGCUGUAC .((-((((.....((((((((.....))))))))..(((((((.((........)).....))))))).............))))))..(((..((((......))))..))).... ( -32.60) >DroSim_CAF1 46349 116 - 1 UUU-UUCCAAGGCGUCGGAGAAAACUUUUCCGGCAAAUUUGUGGCUAAUUUAUGAGACCAACGCAGGUAGGAAGAAGAAAAGGGAAAUGAGCUGAGUCUAGAAAGGCUUGGCUGUAC (((-((((.....((((((((.....))))))))..(((((((.((........)).....))))))).))))))).............(((..(((((....)))))..))).... ( -34.70) >DroEre_CAF1 41380 116 - 1 UUU-UUCCAAGGCGUCGGAGAAAACUUUUCCGGCAAAUUUGUGGCUAAUUUAUGAGACCAACGCAGGUAGAAAGAAAGGAAGGGAAAUGAGCUGAGUCUAGAAAGGUUUGGCUGUAC (((-((((.....((((((((.....))))))))..(((((((.((........)).....))))))).........))))))).....(((..(..((....))..)..))).... ( -29.50) >DroYak_CAF1 42501 116 - 1 UUUUUUCUAAGGCGUCGGAGAAAAGUUUUCCGGCAAAUUUGUGGCUAAUUUAUGAGACCAACACAGGUAGCAAGGAA-UAAGGGAAAUGAGCUGAAUCCAAAAAGGUUCGGCUGUAC ....((((...((((((((((.....))))))))..(((((((.((........)).....))))))).))..))))-...........(((((((((......))))))))).... ( -31.30) >DroAna_CAF1 40574 94 - 1 UUU-UUUGGUGGCGCCGAAGGAAACUUUUCCGGCAAAUUUGUGGCUAAUUUAUGGGACCAGCUCAGGUAGAAG---------------GAGCUG-------CAGGGUCUGGCUGUAC ...-....(..(((((((((....)))...))))...((((..(((..(((.((((.....))))....))).---------------.)))..-------)))).....))..).. ( -27.60) >consensus UUU_UUCCAAGGCGUCGGAGAAAACUUUUCCGGCAAAUUUGUGGCUAAUUUAUGAGACCAACACAGGUAGAAAGAAGAAAAGGGAAAUGAGCUGAGUCUAGAAAGGCUUGGCUGUAC ....((((.....(((((((((...)))))))))..(((((((.((........)).....)))))))..............))))...(((((((((......))))))))).... (-23.96 = -24.68 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:52 2006