Locus 2693

Sequence ID	2L_DroMel_CAF1
Location	7,537,869 – 7,537,961
Length	92
Max. P	0.982888

overview

Window 3

Location	7,537,869 – 7,537,961
Length	92
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	89.11
Mean single sequence MFE	-10.96
Consensus MFE	-9.24
Energy contribution	-9.68
Covariance contribution	0.44
Combinations/Pair	1.05
Mean z-score	-2.12
Structure conservation index	0.84
SVM decision value	1.93
SVM RNA-class probability	0.982888
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7537869 92 + 22407834
CCAUUUUCCAAGGUAAUAAAAUCCUAUCCAUCAAUGGUUUUUAUUGCUUUUCAUCCAUUU-CUAUAUCAUAAAUCAAAUGAUUUGUUUUCCUC
.........((((((((((((.((...........)).))))))))))))..........-.......(((((((....)))))))....... ( -14.50)
>DroSec_CAF1 40041 93 + 1
CCAUUUUCCAAGGUAAUAAAAUCCUAUCCAUCAAUGGUUUUUACUGCUUUUCAUCCAUUCGCUGUAUAAUAAAUCAAAUGAUUUGUUUUCCUC
.........((((((.(((((.((...........)).))))).)))))).................((((((((....))))))))...... ( -11.60)
>DroSim_CAF1 44148 92 + 1
CCAUUUUCCAAGGUAAUAAAAUCCUAUCCAUCAAUGGUUUUUACUGCUUUUCAUCCGUUU-CUGUGUCAUAAAUCAAAUGAUUUGUUUUCCUC
.........((((((.(((((.((...........)).))))).))))))..........-.......(((((((....)))))))....... ( -10.80)
>DroEre_CAF1 39160 86 + 1
CCAUUUUCCACGGCAAUAAAAUCCAAUUCAUCAAUGGUUUUUACUGCUCUUCAUCCAUUG-------CAUAAAUCAAAUUAUUUGUUAUCCUC
...........((((.(((((.(((.........))).))))).))))............-------.......................... (  -8.10)
>DroYak_CAF1 40286 86 + 1
CCAUUUUCCAUGGUAAUAAAAUCCAAUCCAUCAAUGGUUUUUACUGCUUUUCGUCCAUUU-------CAUAAAUCAAAUGAUUUGUUUUCCUC
...........((((.(((((.(((.........))).))))).))))............-------.(((((((....)))))))....... (  -9.80)
>consensus
CCAUUUUCCAAGGUAAUAAAAUCCUAUCCAUCAAUGGUUUUUACUGCUUUUCAUCCAUUU_CU_U_UCAUAAAUCAAAUGAUUUGUUUUCCUC
.........((((((.(((((.((...........)).))))).))))))..................(((((((....)))))))....... ( -9.24 =  -9.68 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:51 2006