Locus 2692

Sequence ID 2L_DroMel_CAF1
Location 7,533,069 – 7,533,163
Length 94
Max. P 0.845743
window4282

overview

Window 2

Location 7,533,069 – 7,533,163
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 97.02
Mean single sequence MFE -32.22
Consensus MFE -30.32
Energy contribution -30.80
Covariance contribution 0.48
Combinations/Pair 1.07
Mean z-score -1.33
Structure conservation index 0.94
SVM decision value 0.77
SVM RNA-class probability 0.845743
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7533069 94 + 22407834
GGCCAGGUUUUCAGGCACCUUCAGCCGGCGAAAGAGACAGCAACUGAGUUUUAGAAAGAGGCGGUUGCACGGACGGAGAUGGAGAGUUUGUCGU
(((.((.((((((.....((((..(((.(....).....(((((((..(((.....)))..))))))).)))..)))).)))))).)).))).. ( -27.60)
>DroSec_CAF1 35279 94 + 1
GGCCAGGUUUUCAGGCACCUCCAGCCGGCGAAAGAGACAGCAACUGAGUUUUAGAAAGAGGCGGUUGCACGGACGGAGAUGGAGACUUUGUCGU
(((.(((((((((.....((((..(((.(....).....(((((((..(((.....)))..))))))).)))..)))).))))))))).))).. ( -34.40)
>DroSim_CAF1 39617 94 + 1
GGCCAGGUUUUCAGGCACCUCCAGCCGGCGAAAGAGACAGCAACUGAGUUUUAGAAAGAGGCGGUUGCACGGACGGAGAUGGAGACUUUGUCGU
(((.(((((((((.....((((..(((.(....).....(((((((..(((.....)))..))))))).)))..)))).))))))))).))).. ( -34.40)
>DroEre_CAF1 34227 94 + 1
GGCCAGGUUUUCAGGCACCUCCAGCCGGCGAAAGAGACAGCAACUGCGUUUUAGAAAGAGGCGGCUGCACGGACGGAGAUGGAGACUUUGUCGU
(((.(((((((((.....((((..(((.(....).....(((.((((.(((.....))).)))).))).)))..)))).))))))))).))).. ( -34.60)
>DroYak_CAF1 35293 94 + 1
GGCCAGGUUUUCAGGCACCUCCAGCCGGCGAAAGAGACAGCGACGGAGUAUUAGAAAGAGGCGGUUGCACGGACGGAGAUGGAGACUUUGUCGU
(((.(((((((((.....((((..(((.(....).....(((((.(....((.....))..).))))).)))..)))).))))))))).))).. ( -30.10)
>consensus
GGCCAGGUUUUCAGGCACCUCCAGCCGGCGAAAGAGACAGCAACUGAGUUUUAGAAAGAGGCGGUUGCACGGACGGAGAUGGAGACUUUGUCGU
(((.(((((((((.....((((..(((.(....).....(((((((..(((.....)))..))))))).)))..)))).))))))))).))).. (-30.32 = -30.80 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:50 2006