Locus 2691

Sequence ID 2L_DroMel_CAF1
Location 7,519,497 – 7,519,587
Length 90
Max. P 0.811281
window4281

overview

Window 1

Location 7,519,497 – 7,519,587
Length 90
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 75.04
Mean single sequence MFE -18.97
Consensus MFE -14.97
Energy contribution -14.92
Covariance contribution -0.05
Combinations/Pair 1.22
Mean z-score -0.93
Structure conservation index 0.79
SVM decision value 0.65
SVM RNA-class probability 0.811281
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7519497 90 - 22407834
U----AUACAUAUAUAUGUACAUAU-UUUUUAAGAAUGUGAGGCUGGUCACGUCGAAA---UGGCGUUGCAAACAGUUUUGCAAAUUAAUGAGGCAGU
.----.(((((....)))))(((((-((.....)))))))..((((.(((((((....---.)))))((((((....)))))).........)))))) ( -18.90)
>DroSec_CAF1 21754 75 - 1
U----AUAUA----------------UUUUUAAGAAUGUGAGGCUGGUCACGUCGAAA---UGGCGUUGCAAACAGUUUUGCAAAUUAAUGAGGCAGU
.----.....----------------...((((...((..((((((((.(((((....---.))))).))...))))))..))..))))......... ( -16.30)
>DroSim_CAF1 25634 75 - 1
U----AUAUA----------------UUUUUAAGAAUGUGAGGCUGGUCACGUCGAAA---UGGCGUUGCAAACAGUUUUGCAAAUUAAUGAGGCAGU
.----.....----------------...((((...((..((((((((.(((((....---.))))).))...))))))..))..))))......... ( -16.30)
>DroEre_CAF1 20475 93 - 1
UUUGUACACCUAUAUGUAUGUA--UAUUUUUAAGAAUCUGAGGCUGGUCACGUCGAAA---UGGCGUAGCAAACAGUUUCGCAAAUAAAUGAGGCAGU
(((((.....(((((....)))--)).............((((((((..(((((....---.)))))..)...))))))))))))............. ( -16.60)
>DroYak_CAF1 21447 95 - 1
UUUGUAUACAUACAUGUGUGUAUAUAUUUUUAAGAAUGUGAGGCUGGUCACGUCGAAA---UGGCGUUGCAAACAGUUUUGCAAAUUAAUGAGGCAGC
..((((((((((....))))))))))...((((...((..((((((((.(((((....---.))))).))...))))))..))..))))......... ( -25.30)
>DroAna_CAF1 21518 94 - 1
CUUAUAAACAUCCAUA----UAUUUCCUUCCCAAACUGCGAGGCUGGUCACGUCGAGUGUUUUAUUUGGCGAACAGUUUUGCAAAUUAAUGAGCCGGC
................----................((((((((((....(((((((((...)))))))))..))))))))))............... ( -20.40)
>consensus
U____AUACAUA_AU_____UA__U_UUUUUAAGAAUGUGAGGCUGGUCACGUCGAAA___UGGCGUUGCAAACAGUUUUGCAAAUUAAUGAGGCAGU
....................................((((((((((((.((((((......)))))).))...))))))))))............... (-14.97 = -14.92 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:49 2006