| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,512,067 – 7,512,183 |
| Length | 116 |
| Max. P | 0.972944 |
| Location | 7,512,067 – 7,512,183 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 74.02 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -5.94 |
| Energy contribution | -6.82 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.29 |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.972944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7512067 116 + 22407834 AAACUGGAAUGAAAACAUACUCCAUUUCAGAAGGUGUAUUAAUUUUAUGUUUAUAUAUAAAAUGCUGGCUUCCCCUUAACCGGGCAACCAAAAACCCAAUUAAUCUCACUCUCUUC ...((((((((...........))))))))..((((.(((((((((((((....)))))))))..(((.((.(((......))).)))))..........))))..))))...... ( -21.90) >DroSec_CAF1 14411 92 + 1 AAGCUGGAAUGAAAACAU-------UUCGGAAAGUGUAUUCAUUUUA--------UAUAAAAGGC---------CUUAGCCGGGCACCCAAAAACCCAAUUAAUCUCACUCUCUUC ....(((((((((.((((-------((....)))))).)))))))))--------.......(((---------....)))(((..........)))................... ( -17.70) >DroSim_CAF1 17561 108 + 1 AAACUGAAAUGAAAACAUACUCCAAUUCGGAAAGUGUAUUCAUUUUA--------UAUAAAAUGCUUGCCUCCCCUUAACCGGGCACCCAAAAACCCAAUUAAUCUCACUCUCUUC ....(((((((((.((((..(((.....)))..)))).)))))))))--------.......((..(((((..........)))))..)).......................... ( -19.40) >DroEre_CAF1 13243 110 + 1 AAACUGGAAAGA---UAUGCUCCAUUUCGGA-AGUGUAUUAAAUA-UUGGUU-UUAAUGAAAGGCUGACCUCCCCUUUACCGGGCACCCAAAACCCCAAUUAAUCGCACUCUCUUU ....((((....---.....))))....(..-((((((((((...-..((((-((....(((((.........)))))...((....))))))))....))))).)))))..)... ( -20.20) >DroYak_CAF1 13829 111 + 1 GGAAUAAAAACC---AAUACUCCAUCUUGGA-AGUGUUUUAAUUUUUUGGGU-UAAACAAAAGGCUGGCCUCCCCUUUACCGGGCACCCAAAACCCCAAUUAAUCCCACUCUCUUC (((.........---((((((((.....)).-))))))((((((((((((((-........(((....))).(((......))).))))))))....))))))))).......... ( -23.20) >consensus AAACUGGAAUGAAAACAUACUCCAUUUCGGAAAGUGUAUUAAUUUUAUG__U_U_UAUAAAAGGCUGGCCUCCCCUUAACCGGGCACCCAAAAACCCAAUUAAUCUCACUCUCUUC ............................(((.((((..((((((................((((.........))))....(((..........)))))))))...)))).))).. ( -5.94 = -6.82 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:47 2006