Locus 2688

Sequence ID 2L_DroMel_CAF1
Location 7,511,453 – 7,511,569
Length 116
Max. P 0.606659
window4277

overview

Window 7

Location 7,511,453 – 7,511,569
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 93.67
Mean single sequence MFE -23.57
Consensus MFE -17.76
Energy contribution -18.36
Covariance contribution 0.60
Combinations/Pair 1.08
Mean z-score -1.88
Structure conservation index 0.75
SVM decision value 0.15
SVM RNA-class probability 0.606659
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7511453 116 - 22407834
UCGAAGAUCAUUAGCAUGCCAACAAGAAAAUAAAGGAAGAACAAAAGAGAACAAGAUCAGGGAACAGAGCUGAAAUGGCUAACAGGUAACUGGGAGUGAUAUAAGACUUUGUUUCC
.....(((((((..(.((....)).)..)))...(......)............)))).((((((((((((...((.(((..(((....)))..))).))...)).)))))))))) ( -25.20)
>DroSec_CAF1 13672 114 - 1
UCGAAGAUCAUUAGCAUGCCAACGAGAAA--AAAGGAAGAACCAAAGAGAACAAGAUCAGGGAACAGAGCUUAAAUGGCUAACAGGUAACUGGGAGUGAUAUAAGACUUUGUUUCC
.....((((....(....)..........--...((.....))...........)))).((((((((((((((.((.(((..(((....)))..))).)).)))).)))))))))) ( -29.30)
>DroSim_CAF1 16821 115 - 1
UCGAAGAUCAUUAACAUGCCAACGAGAAAA-AAAGGAAGAACAAAAGAGAACAAGAUCAGGGAACAGAGCUAAAAUGGCUAACAGGUAACUGGGAGUGAUAUAAGACUUUGUUUCC
.....((((.........((..........-...)).....(......).....)))).((((((((((((.(.((.(((..(((....)))..))).)).).)).)))))))))) ( -23.92)
>DroEre_CAF1 12488 114 - 1
UCGAAGAUCAUUAGCAUGCCAACAAGAAA--AAAGGAGGAACAAAAGAGAACAAGAUCAGGGAACCCUGGUAAAAUGGUUAACAGGUAACUGGAAGUGAUAUAAGACUUUGUUUCC
.(((((.((.(((.(((((((........--...(......).............((((((....))))))....))))...(((....)))...)))...))))))))))..... ( -19.60)
>DroYak_CAF1 13072 115 - 1
UCGAAGAACAUUAGCAUGCCAACAAGAAAA-AAAGGAAGAACAAAAGAGAACAAGAUCAGGGAACAGAGGUAAAUUGGCUGACAGGUAACUGGGAGUGAUAUAAGACUUUGUUUCC
..............................-............................((((((((((......(.(((..(((....)))..))).).......)))))))))) ( -19.82)
>consensus
UCGAAGAUCAUUAGCAUGCCAACAAGAAAA_AAAGGAAGAACAAAAGAGAACAAGAUCAGGGAACAGAGCUAAAAUGGCUAACAGGUAACUGGGAGUGAUAUAAGACUUUGUUUCC
.....((((.......((....))..........(......)............)))).((((((((((.....((.(((..(((....)))..))).))......)))))))))) (-17.76 = -18.36 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:46 2006