| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,510,216 – 7,510,334 |
| Length | 118 |
| Max. P | 0.999913 |
| Location | 7,510,216 – 7,510,314 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 98.16 |
| Mean single sequence MFE | -29.44 |
| Consensus MFE | -29.24 |
| Energy contribution | -28.68 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.644266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7510216 98 + 22407834 AAAGUAAAACCUACGGCAAUGCGACAAUCCCAUUUGUCAUCUCUGGCUGUCGGUUGCCUCUGGGGUAAACCCGGUGACCAGGUCGCCCACCAAUCUGC ...(((.....)))(((.....(((((......)))))......((((...(((..((...(((.....)))))..))).)))))))........... ( -29.20) >DroSec_CAF1 12416 98 + 1 AAAGUAAAACCUACGGCAAUGCGACAAUCCCAUUUGUCAUCUCUGGCUGUCGGUUGCCUCUGGGGUAAACCCGGUGACCAGGUCGCCCAGCAAUCUGC ...(((.....))).(((.((((((((......)))))......(((..(((((..((...(((.....)))))..))).))..)))..)))...))) ( -29.60) >DroSim_CAF1 15559 98 + 1 AAAGUAAAACCUACGGCAAUGCGACAAUCCCAUUUGUCAUCUCUGGCUGUCGGUUGCCUCUGGGGUAAACCCGGUGACCAGGUCGCCCACCAAUCUGC ...(((.....)))(((.....(((((......)))))......((((...(((..((...(((.....)))))..))).)))))))........... ( -29.20) >DroEre_CAF1 11234 98 + 1 AAAGUAAAACCUACGGCAAUGCGACAAUCCCAUUUGUCAUCUCUGGCUGUCGGUUGCCUCUGGGGUAAACCUGGUGACCAGGUCGCCCACCAAUCUGC ..((...((((.(((((.....(((((......))))).......))))).))))....)).((((..((((((...)))))).)))).......... ( -30.40) >DroYak_CAF1 11754 98 + 1 AAAGUAAAACCUACGGCAAUGCGACAAUCCCAUUUGUCAUCUCUGGCUGUCGGUUGCCUCUGGGGUAAACCUGGUGACUAGGCCGCCCACCAAUCUGC ...(((.....)))(((.....(((((......)))))......((((...(((..((...((......)).))..))).)))))))........... ( -28.80) >consensus AAAGUAAAACCUACGGCAAUGCGACAAUCCCAUUUGUCAUCUCUGGCUGUCGGUUGCCUCUGGGGUAAACCCGGUGACCAGGUCGCCCACCAAUCUGC ...(((.....)))(((.....(((((......)))))......((((...(((..((...(((.....)))))..))).)))))))........... (-29.24 = -28.68 + -0.56)
| Location | 7,510,238 – 7,510,334 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 95.66 |
| Mean single sequence MFE | -30.64 |
| Consensus MFE | -28.60 |
| Energy contribution | -28.40 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.93 |
| SVM decision value | 4.52 |
| SVM RNA-class probability | 0.999913 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7510238 96 + 22407834 GACAAUCCCAUUUGUCAUCUCUGGCUGUCGGUUGCCUCUGGGGUAAACCCGGUGACCAGGUCGCCCACCAAUCUGCCAGAUACC-CACCCUUUUACC (((((......)))))...((((((....(((..((...(((.....)))))..))).(((.....))).....))))))....-............ ( -31.90) >DroSec_CAF1 12438 96 + 1 GACAAUCCCAUUUGUCAUCUCUGGCUGUCGGUUGCCUCUGGGGUAAACCCGGUGACCAGGUCGCCCAGCAAUCUGCCAGAUCCC-CACCCUUUUACC (((((......)))))...((((((....((((((....(((.....)))((((((...))))))..)))))).))))))....-............ ( -33.90) >DroSim_CAF1 15581 96 + 1 GACAAUCCCAUUUGUCAUCUCUGGCUGUCGGUUGCCUCUGGGGUAAACCCGGUGACCAGGUCGCCCACCAAUCUGCCAGAUCCC-CACCCUUUUACC (((((......)))))...((((((....(((..((...(((.....)))))..))).(((.....))).....))))))....-............ ( -31.90) >DroEre_CAF1 11256 97 + 1 GACAAUCCCAUUUGUCAUCUCUGGCUGUCGGUUGCCUCUGGGGUAAACCUGGUGACCAGGUCGCCCACCAAUCUGCCAGAUCCCUCGCCCUUUUACC (((((......)))))...((((((....(((((......((((..((((((...)))))).))))..))))).))))))................. ( -31.20) >DroYak_CAF1 11776 97 + 1 GACAAUCCCAUUUGUCAUCUCUGGCUGUCGGUUGCCUCUGGGGUAAACCUGGUGACUAGGCCGCCCACCAAUCUGCCACACACCUCACCCUUUUACC (((((......))))).....((((.((.(((.(((((..((.....))..).....)))).))).))......))))................... ( -24.30) >consensus GACAAUCCCAUUUGUCAUCUCUGGCUGUCGGUUGCCUCUGGGGUAAACCCGGUGACCAGGUCGCCCACCAAUCUGCCAGAUCCC_CACCCUUUUACC (((((......)))))...((((((....(((..((...(((.....)))))..))).((....))........))))))................. (-28.60 = -28.40 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:42 2006