Locus 2684

Sequence ID 2L_DroMel_CAF1
Location 7,501,653 – 7,501,758
Length 105
Max. P 0.984100
window4270

overview

Window 0

Location 7,501,653 – 7,501,758
Length 105
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 75.74
Mean single sequence MFE -21.57
Consensus MFE -11.29
Energy contribution -12.60
Covariance contribution 1.31
Combinations/Pair 1.20
Mean z-score -2.54
Structure conservation index 0.52
SVM decision value 1.96
SVM RNA-class probability 0.984100
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7501653 105 + 22407834
UCAAAAAUCCC--AAUCUUAUGCCU---CCAUAAAUCCAAGUAUUGCAGACAAUGCCACCUAAUCCUUGGC---GGAAAUAAAUAUAA-UUUUCCCUUGCCAUUCUCUGCGAGU
...........--....(((((...---.))))).........(((((((.(((((((.........))))---(((((.........-.)))))......))).))))))).. ( -17.90)
>DroPse_CAF1 8040 108 + 1
UGAAAUAUCUCUAAAUUUAAGGCCCCUACCACAAAUCCUUUUGUGGG----AUUUCUG--UAUUCUUAAACAGAGAAAGAACAUCUGCUGUUUCUUAAGCUCUUUUCUGCCUGG
...................((((.....(((((((....))))))).----.((((((--(........))))))).((((.....(((........)))....)))))))).. ( -24.40)
>DroSec_CAF1 3954 105 + 1
UCAAAAGUCCC--AAUCUUAUACCU---CCAUAAAUGCAAGUAUUGCAGACAAUGCCGCCUAAUCCUUGGC---GGAAAUAAAAAUAA-UUUUCCCUAGCCAUUCUCUGCGAGU
...........--............---...............(((((((.((((.((((........)))---(((((.........-.)))))...).)))).))))))).. ( -20.90)
>DroSim_CAF1 6164 105 + 1
UCAAAAAUCCA--AAUCUUAUACCU---CCAUAAAUCCAAGUAUUGCAGACAAUGCCGCCUAAUCCUUGGC---GGAAAUAAAUAUAA-UUUUCCCUAGCCAUUCUCUGCGAGU
...........--............---...............(((((((.((((.((((........)))---(((((.........-.)))))...).)))).))))))).. ( -20.90)
>DroEre_CAF1 2675 91 + 1
UCAAAAAUG-------------------CCAUAAAUCCAAGCAUUGCAGACAAUGCCGCCUAAUCCUUGGC---GGAAAUAAAUAUAA-GUUUCCCUAGCCAUUCUCUGCGAGU
((...((((-------------------(...........)))))(((((.((((.((((........)))---((((((........-))))))...).)))).))))))).. ( -23.50)
>DroYak_CAF1 3068 105 + 1
UCAAAAAUCCC--AAUCUUGUGCCA---CCAUAAAUCCAAGCAUUGCAGACAAUGCCGCCUAAUCCUUGGC---GGAAAUAAAUAUAA-UUUUCCCUAGCCAUUCUCUGCGAGU
...........--....(((((...---.))))).........(((((((.((((.((((........)))---(((((.........-.)))))...).)))).))))))).. ( -21.80)
>consensus
UCAAAAAUCCC__AAUCUUAUGCCU___CCAUAAAUCCAAGUAUUGCAGACAAUGCCGCCUAAUCCUUGGC___GGAAAUAAAUAUAA_UUUUCCCUAGCCAUUCUCUGCGAGU
...........................................(((((((.((((.((((........)))...(((((...........)))))...).)))).))))))).. (-11.29 = -12.60 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:39 2006