Locus 2682

Sequence ID 2L_DroMel_CAF1
Location 7,498,469 – 7,498,581
Length 112
Max. P 0.648223
window4268

overview

Window 8

Location 7,498,469 – 7,498,581
Length 112
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 99.40
Mean single sequence MFE -24.83
Consensus MFE -24.40
Energy contribution -24.73
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.98
SVM decision value 0.24
SVM RNA-class probability 0.648223
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7498469 112 + 22407834
AUUGGUUUUUGUUUCAUUUGUGAUUAUUAUCAUAAUAUAUCGAUAUCGAUCUCUGUGUGAUGCAUUGUGAUUGAUCGCUUUCUACUUAGGUUAAAGUUGGGAUGGGUUCUGG
.(..(..((..(..((...(((((((..((((((((.((((.((((.(....).)))))))).))))))))))))))).....((((......))))))..)..))..)..) ( -25.10)
>DroSim_CAF1 21299 112 + 1
AUUGGUUUUUGUUUCAUUUGUGAUUAUUAUCAUAAUAUAUCGAUAUCGAUCUCUGUGUGAUGCAUUGUGAUUGAUCGCUUUCUACUUAGGUUAAAGUUGGGAUGGGUUCUGG
.(..(..((..(..((...(((((((..((((((((.((((.((((.(....).)))))))).))))))))))))))).....((((......))))))..)..))..)..) ( -25.10)
>DroEre_CAF1 21492 112 + 1
AUUGGUUUUUGUUUCAUUUGUGAUUAUUAUCAUAAUAUAUCGAUAUCGAUCUCUGUGUGAUGCUUUGUGAUUGAUCGCUUUCUACUUAGGUUAAAGUUGGGAUGGGUUCUGG
.(..(..((..(..((...(((((((..(((((((..((((.((((.(....).))))))))..)))))))))))))).....((((......))))))..)..))..)..) ( -24.30)
>consensus
AUUGGUUUUUGUUUCAUUUGUGAUUAUUAUCAUAAUAUAUCGAUAUCGAUCUCUGUGUGAUGCAUUGUGAUUGAUCGCUUUCUACUUAGGUUAAAGUUGGGAUGGGUUCUGG
.(..(..((..(..((...(((((((..((((((((.((((.((((.(....).)))))))).))))))))))))))).....((((......))))))..)..))..)..) (-24.40 = -24.73 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:37 2006