Locus 268

Sequence ID 2L_DroMel_CAF1
Location 767,003 – 767,093
Length 90
Max. P 0.832245
window427

overview

Window 7

Location 767,003 – 767,093
Length 90
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 76.72
Mean single sequence MFE -26.98
Consensus MFE -16.50
Energy contribution -18.87
Covariance contribution 2.36
Combinations/Pair 1.33
Mean z-score -1.68
Structure conservation index 0.61
SVM decision value 0.72
SVM RNA-class probability 0.832245
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 767003 90 - 22407834
CAUAUUUGGUUUAGCUAAUGCCUUUUGUCAGCUCGGCUCAUCUCUGGCUGGAGCAUUACGCAUACGCCGCGUGAGCGACGGAAAACUUUU----
.......(((((.((((((((......(((((.(((.......)))))))).)))))).))...((.(((....))).))..)))))...---- ( -25.80)
>DroSec_CAF1 28750 90 - 1
CAUAUUGGGUUUAGCUAAUGCCUUUUGUCAGCUGGGCUCAUCUCUGGCUGGCGCAUUACGCAUACGCCGCGUGAGCGCCGGAAAACUUUC----
.....(((((((((((.((.......)).))))))))))).......(((((((.((((((.......))))))))))))).........---- ( -34.10)
>DroSim_CAF1 32144 90 - 1
CAUAUUGGGCUUAGCUAAUGCCUUUUGUCAGCUCGGCUCAUCUCUGGCUGGCGCAUUACGCAUACGCCGCGUGAGCGCCGGAAAACUUUC----
.....((((((.((((.((.......)).)))).)))))).......(((((((.((((((.......))))))))))))).........---- ( -33.40)
>DroEre_CAF1 28981 89 - 1
CACACUGGGUUUAGCUAGUUCCUUUCCUCAGCUGUGCUCAUCUCUGUCUGGCGCAUUACGCAUACGCCGCGUGAGCA-CGGAAAACUUUC----
.....(((((.(((((((........)).))))).)))))..(((((..((((...........))))((....)))-))))........---- ( -24.40)
>DroWil_CAF1 26473 84 - 1
CUUAAUUAUUUUAGAUGGUUCGACUUGG------CGCUCAUCUCAAAGUGAACUUUUUCUUA----GCGCGUUUGCUUUUGAAAAGUUUUCAGC
.....((((((((((((((.(......)------.)).))))).)))))))(((((((...(----(((....))))...)))))))....... ( -16.00)
>DroYak_CAF1 32256 90 - 1
CAUAUUGGGUUUAGCUAAUUCCUUUUGUCAGCCGUGCUCAUCUCUGCCUGGCGCAUUACGCAUACGCCGCGUGAGCGCCGGAAAACUUUC----
.....(((((...(((.((.......)).)))...))))).......(((((((.((((((.......))))))))))))).........---- ( -28.20)
>consensus
CAUAUUGGGUUUAGCUAAUGCCUUUUGUCAGCUGGGCUCAUCUCUGGCUGGCGCAUUACGCAUACGCCGCGUGAGCGCCGGAAAACUUUC____
.....(((((..((((.((.......)).))))..))))).......(((((((.((((((.......)))))))))))))............. (-16.50 = -18.87 +   2.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:36 2006