Locus 2679

Sequence ID 2L_DroMel_CAF1
Location 7,497,210 – 7,497,330
Length 120
Max. P 0.637757
window4265

overview

Window 5

Location 7,497,210 – 7,497,330
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.17
Mean single sequence MFE -47.58
Consensus MFE -39.14
Energy contribution -39.82
Covariance contribution 0.68
Combinations/Pair 1.10
Mean z-score -1.39
Structure conservation index 0.82
SVM decision value 0.22
SVM RNA-class probability 0.637757
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7497210 120 + 22407834
GGCAUGCAGCUCUCGGCUGACUCCAUCAGCUUGGCCAGGGCCUCCUUCUCGUCAAAGGCUCGCACCAGUGCGGCGCCGAGAAGGACGAUUGCCACCAGAAUGAUUGGAGUAGACUGCAUG
..(((((((.(((......(((((((((..((((....(((.((((((((......((((((((....))))).))))))))))).....))).))))..))).)))))))))))))))) ( -50.40)
>DroSec_CAF1 19773 120 + 1
GGAAUGCAGCCCUCGGCUGUCUCCAUCAGCUUGGCCAGGGCUUCCUUCUCGUCAAAGGCUCGCACCAGUGCGGCGCCGAGGAGGACGAUUGCCACCAGAAUGAUUGGAGUAGACUGCAUG
...((((((.......(((.((((((((..((((....(((.((.(((((.((...((((((((....))))).))))).))))).))..))).))))..))).)))))))).)))))). ( -46.80)
>DroSim_CAF1 19999 119 + 1
GGAAUGCAGCCCUCGGCUGUCUCCAUCAGCUUGGCCAGGGCUU-CUUCUCGUCAAAGGCUCGCACCAGUGCGGCGCCGAGGAGGACGAUUGCCACCAGAAUGAUUGGAGUAGACUGCAUG
...((((((.......(((.((((((((..((((....(((.(-((((((.((...((((((((....))))).))))).))))).))..))).))))..))).)))))))).)))))). ( -46.20)
>DroEre_CAF1 20124 120 + 1
GGAAUGCAUACCUCGGCUGUUUCCAUCAGCUUGGCCAGGGCUGCCUUCUCGUCAAAGGCUCGCACCAAUGCGGCGCCGAGGAGGACGAUUGCCACCAGAGUGAUUGGAGUGGACUGCAUG
...(((((..((.((((.(((.....((((((.....))))))(((((((......((((((((....))))).))))))))))..))).))).((((.....)))).).))..))))). ( -39.50)
>DroYak_CAF1 20419 120 + 1
GCAAGGCAGCUCUCGGCUGCCUCCAUCAGCUUGGCCAUUGCUUCCUUCUCGUCAAAGGCUCGCACCAUGGCGACGCCGAGAAGGACGAUGGCCACCAGAACGAUUGGAGUAGACUGCAUG
(((.((((((.....))))))((((((..(((((((((((..((((((((......(((((((......)))).))))))))))))))))))))..))...)).))))......)))... ( -55.00)
>consensus
GGAAUGCAGCCCUCGGCUGUCUCCAUCAGCUUGGCCAGGGCUUCCUUCUCGUCAAAGGCUCGCACCAGUGCGGCGCCGAGGAGGACGAUUGCCACCAGAAUGAUUGGAGUAGACUGCAUG
...((((((.......(((.((((((((..((((....(((.((((((((......((((((((....))))).))))))))))).....))).))))..))).)))))))).)))))). (-39.14 = -39.82 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:34 2006