Locus 2674

Sequence ID 2L_DroMel_CAF1
Location 7,491,150 – 7,491,244
Length 94
Max. P 0.807960
window4257

overview

Window 7

Location 7,491,150 – 7,491,244
Length 94
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 84.51
Mean single sequence MFE -24.10
Consensus MFE -17.39
Energy contribution -16.95
Covariance contribution -0.44
Combinations/Pair 1.10
Mean z-score -1.91
Structure conservation index 0.72
SVM decision value 0.64
SVM RNA-class probability 0.807960
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7491150 94 - 22407834
ACAGUGCCGUUAGAACUAUCGAUGCAGUGCCAGCUCUGACAUUCAAAAAAA-------------AAAGUGUAUAAUAGGUAGCUUCCUCUCAAUGAGUUGGCAAUUU
...((..((.((....)).))..))..(((((((((..(((((........-------------..))))).....(((......)))......))))))))).... ( -19.90)
>DroSec_CAF1 13896 92 - 1
AAAGUGCCGUUAGAACUAUCGAUGCAGUGCCAGCUCUGGCAUUCAAAAAAA---------------AAAGUAUAAUAGGUAGCUUCCUCUCAAUGAGUUGGCUAUUU
...((((((.((....)).)).((.(((((((....)))))))))......---------------...))))...((((((((..(((.....)))..)))))))) ( -23.30)
>DroEre_CAF1 13980 107 - 1
AAAGUACCGUUAGAACUAUCGAUGCAGUGCCAGCUCUGACAUUCAAAAAACGUACGUAUGUACAUGUACGUAUAAUAGGUAGCUUCCUCUCAAUGAGUUGGCAAUUU
...(((.((.((....)).)).)))..((((((((((((..........((((((((......)))))))).....(((......))).)))..))))))))).... ( -28.10)
>DroYak_CAF1 14296 91 - 1
AAAGUACCGUUAGAACUAUCGGUGCAGUGCCAGCUCUGACAUUCAAAAAACGUA----------------UCUAAUAGGUAGCUUCCUCUCAAUGAGUUGGCAAUUU
...((((((.((....)).))))))..(((((((((((.....)).........----------------......(((......)))......))))))))).... ( -25.10)
>consensus
AAAGUACCGUUAGAACUAUCGAUGCAGUGCCAGCUCUGACAUUCAAAAAAA_______________AA_GUAUAAUAGGUAGCUUCCUCUCAAUGAGUUGGCAAUUU
....((((....((....))(((((((.(....).))).))))..................................))))(((..(((.....)))..)))..... (-17.39 = -16.95 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:25 2006