Locus 2672

Sequence ID 2L_DroMel_CAF1
Location 7,485,785 – 7,485,899
Length 114
Max. P 0.612817
window4253

overview

Window 3

Location 7,485,785 – 7,485,899
Length 114
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 66.31
Mean single sequence MFE -26.24
Consensus MFE -10.37
Energy contribution -11.48
Covariance contribution 1.11
Combinations/Pair 1.18
Mean z-score -1.78
Structure conservation index 0.40
SVM decision value 0.16
SVM RNA-class probability 0.612817
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7485785 114 + 22407834
UACUCGCUUAUCAAUUGAAAUUGCAGCAAGGCGGCAGAUGCCUUCAUUUAUAUCUGCUACAUAUUUCUUACAAAGAGUAGUAGUAUGCACGUAGUAGUAGAGAAAUGCGGGAAA
..(((((...((...((((...((......))(((....)))))))......((((((((.....(((.....)))(((......))).....))))))))))...)))))... ( -28.00)
>DroSec_CAF1 8571 113 + 1
UCCUCGCUUAUCAAUUGAAAUUGCUGCAAGGCGGCAGAUGCCAUUAUUUAUAUCUGCUACAUAUUUCUUAUAAAAAGUAGUA-UGUGUACGUAGUAGUCGAGAAAUGCGGGAAA
(((.(((.......((((...((((((...((((((((((..........))))))))(((((((.(((.....))).))))-)))))..)))))).)))).....)))))).. ( -31.80)
>DroSim_CAF1 8621 113 + 1
UCCUCGCUUAUCAAUUGAAAUUGCUGCAAGGCGGCAGAUGCUAUCAUUUAUAUCUGCUACAUAUUUCUUAUAAAAAAUAUUA-UGUGUACGUAGUAGUCGGGAAAUGCGGGAAA
(((.(((...((...(((...((((((.....((((((((.((.....))))))))))((((((....(((.....)))..)-)))))..)))))).))).))...)))))).. ( -28.30)
>DroEre_CAF1 8556 93 + 1
UCCUCGCUUAUCAAUUGAAAUUGCAACAAGGCGGCAGAUGCCUCCAUUUAUAUCUGGUGUCUAUACCC------GG--------------GCAGUA-UGGAGAAAUGCGGGGAA
(((((((.......((.(.(((((.....((.(((....))).))........((((.((....))))------))--------------))))).-).)).....))))))). ( -29.80)
>DroMoj_CAF1 10256 87 + 1
CAAUCGCCAAUCAAUUUAAAUUGCAACAAUGCAGCCG---CCUU--------------------UUCAUAUAAAAAG-AUCU-UGAG--CCGCUUAAAUGAGCGAUACAAUAGA
..(((((...(((.(((((..((((....))))((.(---((((--------------------((......)))))-....-...)--).)))))))))))))))........ ( -13.31)
>consensus
UCCUCGCUUAUCAAUUGAAAUUGCAGCAAGGCGGCAGAUGCCUUCAUUUAUAUCUGCUACAUAUUUCUUAUAAAAAGUAGUA_UGUG_ACGUAGUAGUCGAGAAAUGCGGGAAA
..(((((...((..........((......))((((((((..........)))))))).........................................)).....)))))... (-10.37 = -11.48 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:21 2006