Locus 2670

Sequence ID 2L_DroMel_CAF1
Location 7,484,765 – 7,484,858
Length 93
Max. P 0.687034
window4251

overview

Window 1

Location 7,484,765 – 7,484,858
Length 93
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 74.42
Mean single sequence MFE -32.95
Consensus MFE -20.46
Energy contribution -22.55
Covariance contribution 2.09
Combinations/Pair 1.28
Mean z-score -1.34
Structure conservation index 0.62
SVM decision value 0.32
SVM RNA-class probability 0.687034
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7484765 93 + 22407834
--------------GCCACUUUUGGGCUCGAGCUUGGGGGAA-AGCAUUUUCCAUUGUGAGCUCAGGCGCGGGCCUUUUCCUGGAGCUCCUCCAUUUCGCCUCUUGGC
--------------((((....((((((((....(((..((.-....))..)))...))))))))((((.(((.....)))(((((...)))))...))))...)))) ( -34.20)
>DroPse_CAF1 8049 97 + 1
CAUGGGACAUGUGCGCCACUUUG---------UGUGGGGGAAAGGCAAUCUUCAUUGUAAGCCCAGGUCUGAGGUCUCU--CGACUCUCGCCUCUCUUGGCUCUUGGC
....((((.......((((....---------.))))(((....(((((....)))))...)))..))))((((((...--.))).)))(((......)))....... ( -29.00)
>DroSec_CAF1 7580 93 + 1
--------------GCCACUUUUGGGCUCGAGCUUGGGGGAA-AUCAUUUUCCAUUGUGAGCUCAGGCGCGGGCCUUUUCCUGGAGCUCCUCCAUUUCGCCUCUUGGC
--------------((((....((((((((....(((..((.-....))..)))...))))))))((((.(((.....)))(((((...)))))...))))...)))) ( -34.20)
>DroSim_CAF1 7589 93 + 1
--------------GCCACUUUUGGGCUCGAGCUUGGGGGAA-AGCAUUUUCCAUUGUGAGCUCAGGCGCGGGCCUUUUCCUGGAGCUCCUCCAUUUCGCCUCUUGGC
--------------((((....((((((((....(((..((.-....))..)))...))))))))((((.(((.....)))(((((...)))))...))))...)))) ( -34.20)
>DroEre_CAF1 7563 91 + 1
--------------GCCACUUUUGGGCUCGAGC-UGGGGGAA-AGCAUU-UCCAUUGUGAGCUCAGGCUCGGGCCUUUUCCUGGGGCUCCUCCAUUUCGCCUCUUGGC
--------------((((.....((((((((((-(..(((..-.(((..-.....)))...))).)))))))))))......(((((...........))))).)))) ( -37.00)
>DroAna_CAF1 7693 87 + 1
-------------AGCCACUUUUGGGCCGGAGCUUGGGGGAA-AGCAUUUUCCAUUGUGAGCUCAGGUUCGGGCCUUUUUCCCCAACAA-------CAGCCUCUUGGC
-------------.((((.....((((.(..(.(((((((((-((((........)))..((((......))))..)))))))))))..-------).))))..)))) ( -29.10)
>consensus
______________GCCACUUUUGGGCUCGAGCUUGGGGGAA_AGCAUUUUCCAUUGUGAGCUCAGGCGCGGGCCUUUUCCUGGAGCUCCUCCAUUUCGCCUCUUGGC
..............((((.....(((((((.(((((((......(((........)))...))))))).)))))))......((((...))))...........)))) (-20.46 = -22.55 +   2.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:19 2006