| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 760,101 – 760,209 |
| Length | 108 |
| Max. P | 0.545308 |
| Location | 760,101 – 760,209 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 81.39 |
| Mean single sequence MFE | -41.85 |
| Consensus MFE | -27.47 |
| Energy contribution | -27.58 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545308 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 760101 108 + 22407834 UUACCUUUGCCUCCCAGCCCCAAUUAGAGGAGGCCUGCCUGCCUGCACAGGACUUGAUUAACCUCCGUUUAGCCCACCAGCAGGCCACGGAGGCUA------AGACGGGCUUGA ........(((((((...........).))))))..((((((((....)))......(((.(((((((...(((........))).))))))).))------)..))))).... ( -35.80) >DroVir_CAF1 34410 108 + 1 UGACCUUUGCCUCACAGCCGCAGCUGGAGGAGGCCUGCCUGCCGGCACAGGAUCUGUUCAAUCUCCGGUUGGCCCAUCAGCAGGCUACCGAGGCGA------AAACUGGACUUA ...((((((((((.((((....))))..((.(((((((..((((((...(((...........))).))))))......))))))).)))))))))------)....))..... ( -44.00) >DroGri_CAF1 29839 108 + 1 UGACAUUUGCCUCACAGCCGCAGCUGGAGGAGGCAUGUCUGCCGGCGCAGGAUCUGUUCAAUCUUCGUCUAGCCCAUCAGCAGGCAACUGAGGCGA------AGACUGGAUUAA .((((..((((((.((((....))))...))))))))))..((......))....(((((.(((((((((.((......))((....)).))))))------))).)))))... ( -40.80) >DroMoj_CAF1 34261 108 + 1 UGACGUUCGCCUCACAGCCACAGCUGGAGGAGGCCUGUCUGCCGACACAGGAUCUCAUCAAUCUACGGCUAGCCCAUCAGCAGGCCACCGAGGCCA------AAACGGGGCUCA .((((...(((((.((((....))))...))))).)))).((((......(((...)))......)))).(((((.......((((.....)))).------.....))))).. ( -39.12) >DroAna_CAF1 22808 108 + 1 UGACCUUCGCCUCGCAGCCCCAGCUGGAGGAGGCCUGCCUGCCCACCCAGGACCUCAUCAACCUUCGUCUGGCCCACCAGCAGGCCACCGAGGCCA------AGACGGGGCUCA .............(.((((((.(((((..((((((((..........)))).)))).....((.......))....))))).((((.....)))).------....))))))). ( -42.10) >DroPer_CAF1 25626 114 + 1 UGACCUUUGCCUCGCAGCCGCAGCUGGAGGAGGCCUGCCUGCCCGCCCAGGACCUGAUCAACCUGCGGCUCGCCCACCAGCAGGCCACCGAGGCCACCAGCCGGACGGGGCUCA ........((((((...(((..(((((.((.(((((((..((..(((((((..........)))).)))..))......))))))).(....))).)))))))).))))))... ( -49.30) >consensus UGACCUUUGCCUCACAGCCGCAGCUGGAGGAGGCCUGCCUGCCGGCACAGGACCUGAUCAACCUCCGGCUAGCCCACCAGCAGGCCACCGAGGCCA______AGACGGGGCUCA ........(((((.((((....))))..((.((((((((((......)))((.....))....................))))))).))))))).................... (-27.47 = -27.58 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:35 2006