| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,484,502 – 7,484,599 |
| Length | 97 |
| Max. P | 0.803410 |
| Location | 7,484,502 – 7,484,599 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 88.28 |
| Mean single sequence MFE | -20.80 |
| Consensus MFE | -15.30 |
| Energy contribution | -16.78 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.803410 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7484502 97 + 22407834 CAAAUUGAAGGCACUGCAGUUUGAAAAGUUCGACAUUUAAAGGUCGAGCUUUUUACU-UUAAAGGUUAU-AGCUAAUAAAAAUCCAUAACAUAUUGGCA ....((((((((...))....(((((((((((((........)))))))))))))))-)))).......-.(((((((.............))))))). ( -24.22) >DroSec_CAF1 7310 97 + 1 UAAACUGAAAACACUGCAGUUUGAAAAGUUCGACAUUAAAAGGUCGAGCUUUUUAGU-UUAAAGGUUAU-UGCUAAUAAAAAUCCAUAACAUAUUGGCA .........(((.((.....((((((((((((((........)))))))))))))).-....)))))..-((((((((.............)))))))) ( -24.22) >DroSim_CAF1 7322 97 + 1 UAAACUAAAAGCACUGCAGUUUGAAAAGUUCGACAUUUAAAGGUCGAGCUUUUUAGU-UUAAAGGUUAU-UGCUAAUAAAAAUCCAUAACAUAUUGGCA .........(((.((.....((((((((((((((........)))))))))))))).-....)))))..-((((((((.............)))))))) ( -24.22) >DroEre_CAF1 7320 98 + 1 CAGAUUGAAGGCACUGCAUUUUGCAAAGGCCGACAUUUAAAGGUC-AGCUGUUUAGUUUUAAAGGUUAAAACCUAAUAAAAAUCCAUAAAAUAUUGGCA .(((((((((((..(((.....)))...)))(((........)))-.....))))))))...((((....)))).........(((........))).. ( -17.90) >DroYak_CAF1 7385 98 + 1 UAAAUUGAAAGCACUGCAGUUUGCAAAGUCAGACAUUUAAAGGUCGAGUUUUUUAGUUUUAAAGGUUAU-ACCCAAUAGAAAUCCAUAAGAUAUUGGCA .((((((((((.(((((.....)).......(((........))).)))))))))))))..........-..((((((.............)))))).. ( -13.42) >consensus UAAAUUGAAAGCACUGCAGUUUGAAAAGUUCGACAUUUAAAGGUCGAGCUUUUUAGU_UUAAAGGUUAU_AGCUAAUAAAAAUCCAUAACAUAUUGGCA .........(((.((.....((((((((((((((........))))))))))))))......)))))....(((((((.............))))))). (-15.30 = -16.78 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:18 2006