Locus 2664

Sequence ID 2L_DroMel_CAF1
Location 7,468,200 – 7,468,302
Length 102
Max. P 0.536023
window4245

overview

Window 5

Location 7,468,200 – 7,468,302
Length 102
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 82.44
Mean single sequence MFE -30.55
Consensus MFE -18.40
Energy contribution -18.18
Covariance contribution -0.22
Combinations/Pair 1.25
Mean z-score -2.01
Structure conservation index 0.60
SVM decision value 0.00
SVM RNA-class probability 0.536023
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7468200 102 - 22407834
-AUAUCGAUAAAUAUUGACAGCGCGUCAAGUUGAAUU---AGGAGCAGGGAAUGGUGGUGGAUAGUGAGAG---GUUCAAGUGGAAUCUUCUCAAUUGUCAGCUAUCAU
-...(((((.....(((((.....))))))))))...---...........((((((((.(((((((((((---((((.....))))).)))).)))))).)))))))) ( -28.30)
>DroSec_CAF1 63878 103 - 1
CAUAUCGAUAAAUAUUGACAGCUCGUCAAGUUGAAUU---AGGAGCAGGGAAUGGUGGUGGAUAGUGAGAG---GUUCAAGUGGAAUCUUCUCAAUUGUCAGCGACCAU
....(((((....)))))..((((.(.((......))---).)))).....(((((.((.(((((((((((---((((.....))))).)))).)))))).)).))))) ( -29.50)
>DroSim_CAF1 66195 102 - 1
CAUAUCGAUAAAUAUUGACAGCGCGUCAAGUUGAAUU---C-GAGCAGGGAAUGGUGGUGGAUAGUGAGAG---GUUCAAGUGGAAUCUUCUCAAUUGUCAGCGACCAU
....((((......(((((.....))))).......)---)-)).......(((((.((.(((((((((((---((((.....))))).)))).)))))).)).))))) ( -31.62)
>DroEre_CAF1 67321 106 - 1
CAUAUCGAUAAAUAUUGACAGCGCGUCAGGUCGAAUU---AGGAGCUGGGAAUGGUGGUGGCCAGUGAGAGUGGAAUCAAGUGGAAUCUUCUCAGUUGUCAGCGACCAU
...............((((.....))))(((((....---.(.(((((((((.(((.....(((.(((........)))..))).)))))))))))).)...))))).. ( -28.80)
>DroYak_CAF1 66820 101 - 1
--UAUCCAUAGAUACUGACAGCGCGUCAGCUUAAAUU---GGGUGCAGGGUAUGGCGGUGAUUGGUGAGAG---GUUCAAGUGGAAUCUUCUCAAUUGUCAGCGACCAU
--((((((...(..(((((.....)))))..)....)---)))))......((((((.((((...((((((---((((.....))))).)))))...)))).)).)))) ( -33.70)
>DroAna_CAF1 64744 100 - 1
-AUAUCAAUAAAUAUUGACAGCGUGUCAGGUUCAUGGAAAGAAAGGGGGCAAUGGGGCUGG---GUGAGAG---GUUCCAAUGGAAUCUUCUCAGUUGUC--CAGCCAU
-...(((((....)))))((...((((...(((.......)))....)))).)).((((((---(((((((---(((((...)))))).)))))....))--))))).. ( -31.40)
>consensus
_AUAUCGAUAAAUAUUGACAGCGCGUCAAGUUGAAUU___AGGAGCAGGGAAUGGUGGUGGAUAGUGAGAG___GUUCAAGUGGAAUCUUCUCAAUUGUCAGCGACCAU
..............(((((.....)))))......................((((((.(((....((((((...((((.....)))).))))))....))).)).)))) (-18.40 = -18.18 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:13 2006