Locus 2658

Sequence ID 2L_DroMel_CAF1
Location 7,448,644 – 7,448,737
Length 93
Max. P 0.500000
window4233

overview

Window 3

Location 7,448,644 – 7,448,737
Length 93
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 80.99
Mean single sequence MFE -21.77
Consensus MFE -15.47
Energy contribution -15.17
Covariance contribution -0.30
Combinations/Pair 1.23
Mean z-score -1.15
Structure conservation index 0.71
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7448644 93 - 22407834
AUUCCUA--------C--UCGUAUUCAUGUGCAAUA--ACGCAAAGUGUCAAAGACCCAA-C---CAUAGCUCACUGCGGGGUCAAUUGAUAGACUCAAUUAUGACGAU
.......--------.--.........((((.....--.))))...(((((..(((((..-.---....((.....)).)))))((((((.....)))))).))))).. ( -19.30)
>DroVir_CAF1 51162 94 - 1
UUUUGUA--------CGGGCAU-UUGGUGCGGGAGA--ACCGUAGGUGUCAAAGACCCAA-C---CAUAGCUCACAUCGGGGUCAAUUGAUAGACUCAAUUAUGGCAAU
..((((.--------.((((..-.((((((((....--.)))).((.(((...))))).)-)---))..)))).(((..(((((........)))))....))))))). ( -27.50)
>DroPse_CAF1 49361 87 - 1
AUU----------------CGUAUUCAUGUGCAAUA--ACGGAAAGUGUCAAAGACCCAA-C---CAUAGCUCACUGUGGGGUCAAUUGAUAGACUCAAUUAUGACGAU
.((----------------(((((((....).))).--)))))...(((((..(((((..-.---(((((....))))))))))((((((.....)))))).))))).. ( -21.50)
>DroWil_CAF1 64454 90 - 1
AUU----------------UGUAUUCGUGUACAAUAAAACGGAAAGUGUCAAAGACCCAGUC---CAUAGCUCACCGUGGGGUCAAUUGAUAGACUCAAUUAUGAUGAU
..(----------------(((((....))))))......(((..(.(((...))).)..))---).....(((.(((((((((........)))))...)))).))). ( -16.50)
>DroAna_CAF1 46200 104 - 1
AUUCGUAUUCGUGAUC--UCGUAUUCAUGUGCAAUA--ACAGAGAGUGUCAAAGACCCAA-CCACCAUAGCUCCCAGCGGGGUCAAUUGAUAGACUCAAUUAUGACGAU
..(((...(((((((.--..((((....))))....--...(((..((((((.(((((..-........((.....)).)))))..))))))..))).)))))))))). ( -24.30)
>DroPer_CAF1 51212 87 - 1
AUU----------------CGUAUUCAUGUGCAAUA--ACGGAAAGUGUCAAAGACCCAA-C---CAUAGCUCACUGUGGGGUCAAUUGAUAGACUCAAUUAUGACGAU
.((----------------(((((((....).))).--)))))...(((((..(((((..-.---(((((....))))))))))((((((.....)))))).))))).. ( -21.50)
>consensus
AUU________________CGUAUUCAUGUGCAAUA__ACGGAAAGUGUCAAAGACCCAA_C___CAUAGCUCACUGCGGGGUCAAUUGAUAGACUCAAUUAUGACGAU
....................((((....))))..............(((((..(((((...........((.....)).)))))((((((.....)))))).))))).. (-15.47 = -15.17 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:02 2006