| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,431,505 – 7,431,607 |
| Length | 102 |
| Max. P | 0.514891 |
| Location | 7,431,505 – 7,431,607 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 83.99 |
| Mean single sequence MFE | -18.41 |
| Consensus MFE | -14.37 |
| Energy contribution | -14.70 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514891 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7431505 102 - 22407834 UAUCCUCACAUAAAAUACAUAAAUUUAAGUUUGCUAAGCUCUUGACUAAUUUGAAAAUGACUUUCAGAUGAAAACCACAGCCAGCUUCCGCAAGGAGUACGC ...............(((..............(((..(((........((((((((.....)))))))).........))).))).(((....))))))... ( -16.33) >DroSec_CAF1 27310 85 - 1 UAUCUUUACAUAAAAUACAUUA-----------------UCUGGACUAAUUUGAAAAUGACUUUCAGAUGAAAACCACAGCGAGCUUCCGCAAGGAGUACGC ......................-----------------..(((....((((((((.....)))))))).....)))..(((.(((.((....))))).))) ( -18.20) >DroSim_CAF1 28958 102 - 1 UAUCCUCACAUAAAAUACUUCAAUUUAAGUUUGCUAAAGUCUUGACUAAUUUGAAAAUGACUUUCAGAUGAAAACCACAGCGAGCUUCCGCAAGGAGUACGC ...............(((.........((((((((..(((....))).((((((((.....)))))))).........))))))))(((....))))))... ( -20.70) >consensus UAUCCUCACAUAAAAUACAUAAAUUUAAGUUUGCUAA__UCUUGACUAAUUUGAAAAUGACUUUCAGAUGAAAACCACAGCGAGCUUCCGCAAGGAGUACGC ................................................((((((((.....))))))))..........(((.(((.((....))))).))) (-14.37 = -14.70 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:58 2006