Locus 2650

Sequence ID 2L_DroMel_CAF1
Location 7,411,584 – 7,411,704
Length 120
Max. P 0.564645
window4218

overview

Window 8

Location 7,411,584 – 7,411,704
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -40.88
Consensus MFE -36.78
Energy contribution -36.74
Covariance contribution -0.04
Combinations/Pair 1.20
Mean z-score -1.14
Structure conservation index 0.90
SVM decision value 0.06
SVM RNA-class probability 0.564645
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7411584 120 - 22407834
GGUAGGAUUAUUGUAUUUGGGUUCAUUUUUGCGCCACUUGAAGUAGGUAGCUCGUUUGCCGGAGGCCAAGGAUAUAAACUCGCCCUGCUUGGCCAGAUCGUUGACACCCAGCCAGUAGUU
.....((((((((...(((((((((..((((.((((.....((((((..((..(((((((.........))...)))))..))))))))))))))))....))).)))))).)))))))) ( -33.20)
>DroSec_CAF1 6077 120 - 1
GGUGGGAUUAUUGUACUUGGGUUCAUUUUUGCGCCACUUGAAGUAGGUGGCUCGCUUUCCGGAGGCCAAGGAUAUAAACUCGCCCUGCUUGGCCAGGUCGUUGACUCCCAGCCAGUAGUU
((((((.((((....(((((.(((......((((((((((...))))))))..))......))).)))))...)))).))))))(((((.(((..((..(....)..)).)))))))).. ( -43.70)
>DroSim_CAF1 6303 120 - 1
GGUGGGAUUAUUGUACUUGGGUUCAUUUUUGCGCCACUUGAAGUAGGUGGCUCGUUUGCCGGAGGCCAAGGAUAUAAACUCGCCCUGCUUGGCCAGGUCGUUGACACCCAGCCAGUAGUU
((((((.((((....(((((.(((.....((.((((((((...)))))))).)).......))).)))))...)))).))))))(((((.(((..(((.(....))))..)))))))).. ( -44.50)
>DroEre_CAF1 8561 120 - 1
GGUGGGAUUGUUAUACUUGGGCUCAUUUUUGCGCCACCUGAAGUAGGUGGCUAGUUUGCCGGAGGCCAAGGAUAUAAACUCCCCCUGUUUGGCCAAGUCAUUGACUCCCAGCCAGUAGUU
((.((((...((((((((((.(((......((((((((((...))))))))..))......))).)))))..)))))..))))))...(((((..((((...))))....)))))..... ( -43.00)
>DroYak_CAF1 6604 120 - 1
GGUGGGAUUGUUAUACUUGGGUUCAUUUUUGCGCCACCUGAAGUAGGUGGCUCGUUUGCCGGAGGCCAGGGAUAUAAACUCGCCCUGUUUGGCCAGAUCGUUGACUCCCAGCCAGUAGUU
(((((((..((((..(((((.(((.....((.((((((((...)))))))).)).......))).)))))........((.(((......))).)).....))))))))).))....... ( -40.00)
>consensus
GGUGGGAUUAUUGUACUUGGGUUCAUUUUUGCGCCACUUGAAGUAGGUGGCUCGUUUGCCGGAGGCCAAGGAUAUAAACUCGCCCUGCUUGGCCAGGUCGUUGACUCCCAGCCAGUAGUU
((((((.((((....(((((.(((......((((((((((...))))))))..))......))).)))))...)))).))))))(((((.(((..((((...))))....)))))))).. (-36.78 = -36.74 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:48 2006