Locus 265

Sequence ID 2L_DroMel_CAF1
Location 752,227 – 752,334
Length 107
Max. P 0.797893
window424

overview

Window 4

Location 752,227 – 752,334
Length 107
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 80.04
Mean single sequence MFE -31.43
Consensus MFE -12.66
Energy contribution -11.97
Covariance contribution -0.69
Combinations/Pair 1.18
Mean z-score -2.99
Structure conservation index 0.40
SVM decision value 0.61
SVM RNA-class probability 0.797893
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 752227 107 + 22407834
GACUGCAAGUUGGUAAUCUUGAAACAAUUAUGCAUACGCGCGCAUACAGAGAAAAACGUUCGCCACAGAAAUCUGUGGCGCGUGAGACUCG--------ACAAAAAGUAGUCCAA
((((((...(((................(((((........)))))..(((....(((..((((((((....)))))))))))....))).--------.)))...))))))... ( -34.00)
>DroPse_CAF1 15123 96 + 1
G---GCGGGUGGGUAAUCUCGAAACAAUUAUGCAUACGC--GCAUGCAGAAGGA--------------AAAUCUGUGGCGCGUGAUACUCGGAAAACAGAGAAAAAGUAGCCCAA
.---..(((((((....)))..........(((.(((((--((.((((((....--------------...)))))))))))))...(((........))).....))))))).. ( -29.20)
>DroSec_CAF1 13775 107 + 1
GACUGCAAGUUGGUAAUCUCGAAACAAUUAUGCAUACGCGCGCAUACAGAGAAAAACGUUCGCCACAGAAAUCUGUGGCGCGUGAGACUCG--------ACAAAAAGUAGUCCAA
((((((...(((....((((...........((....))((((.......(((.....)))(((((((....)))))))))))))))....--------.)))...))))))... ( -34.70)
>DroSim_CAF1 17214 107 + 1
GACUGCAAGUUGGUAAUCUCGAAACAAUUAUGCAUACGCGCGCAUACAGAGAAAAACGUUCGCCACAGAAAUCUGUGGCGCGUGGGACUCG--------ACAAAAAGUAGUCCAA
...(((((((((............))))).))))..(((((.........(((.....)))(((((((....))))))))))))((((((.--------.......).))))).. ( -35.00)
>DroAna_CAF1 15569 102 + 1
GACUGCAAGUCGGUAAUCUCGAAACAAUUAUGCAUACGC--GCAUACAGAGGGAAACGCU---CACUGAAAUCUGUGGCGCGUGAGACUCG--------ACAAAAAGUAGCCCAA
.(((....(((((...((((....((....))...((((--((.((((((.(....).(.---....)...)))))))))))))))).)))--------))....)))....... ( -26.60)
>DroPer_CAF1 17914 96 + 1
G---GGGUGUGGGUAAUCUCGAAACAAUUAUGCAUACGC--GCAUGCAGAAGGA--------------AAAUCUGUGGCGCGUGAUACUCGGAAAACAGAGAAAAAGUAGCCCAA
.---((((.((((....)))).........(((.(((((--((.((((((....--------------...)))))))))))))...(((........))).....))))))).. ( -29.10)
>consensus
GACUGCAAGUUGGUAAUCUCGAAACAAUUAUGCAUACGC__GCAUACAGAGAAAAACGUU___CACAGAAAUCUGUGGCGCGUGAGACUCG________ACAAAAAGUAGCCCAA
.......((((.(((((.........)))))...(((((..((.((((((.....................))))))))))))).)))).......................... (-12.66 = -11.97 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:34 2006