| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,411,344 – 7,411,464 |
| Length | 120 |
| Max. P | 0.636918 |
| Location | 7,411,344 – 7,411,464 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.58 |
| Mean single sequence MFE | -31.03 |
| Consensus MFE | -26.56 |
| Energy contribution | -26.24 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.636918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7411344 120 - 22407834 UUCGAUGUAGAAAUAUCUCGAUCCUAUCUGUUGAUAUCUCUGCAGCACGAGUUUCCUUUCGAUAUCGGAUAGAGUCUUCUGGAUGGCUGUCAACUGGUUUUCCGUCCUCUUCUGUCCAUC ...(.((((((.(((((.((........))..))))).)))))).).((((......)))).....((((((((.....((((..(((.......)))..)))).....))))))))... ( -30.10) >DroSec_CAF1 5837 120 - 1 UUCGAUGUAGAAAUACCUCGAUCCUAUCUGUUGGUAUCUCUGCAGCACGAGUUUCCUUUCGAUAUCGGAUAGAGACUUCUGGAUGGCUGUCAGCUGGCUUUCCGUUCUCUUCUGUCCAUC ...(.((((((.(((((.((........))..))))).)))))).).((((......)))).....((((((((.....((((.((((.......)))).)))).....))))))))... ( -34.10) >DroSim_CAF1 6063 120 - 1 UUCGAUGUAAAAAUACCUCGAUCCUAUCUGUUGGUAUCUCUGCAGCACGAGUUUCCUUUCGAUAUCGGAUAGAGUCCUCUGAAUGGCUGUCAGCUGGCUUUCCGUCCUCUUCUGUCCAUC .((((.(((....))).))))...((((.(..((...(((........)))...))..).))))..((((((((......(.((((..(((....)))...)))).)..))))))))... ( -25.90) >DroEre_CAF1 8321 120 - 1 UUCAAUGUAGAAGUACCUCGACCCUAUCUUUUGGUAUCUCUGCAGCACGAGUUUCCUCUCGAUCUCGGAUAGAGUCUUCUGAAUGGCUGUUAGCUGGCUUUCCGUCCUCUUCUGUCCAUC .....((((((..((((...............))))..))))))...((((......)))).....((((((((....(.(((.((((.......))))))).).....))))))))... ( -31.36) >DroYak_CAF1 6364 120 - 1 UUCGAUGUAGAAAUACCUCGAUCCUAUCUGUUGGUACCUCUGCAGCACGAGUUUUCUUUCGAUCUCGGAGAGAGUCUUCUGAAUGGCUGUCAACUGGCUUGCCGUGCUCUUCUGUCCAUC .((((.(((....))).))))..........(((.((....(.((((((((..(((((((.......)))))))..))).....(((.(((....)))..)))))))))....))))).. ( -33.70) >consensus UUCGAUGUAGAAAUACCUCGAUCCUAUCUGUUGGUAUCUCUGCAGCACGAGUUUCCUUUCGAUAUCGGAUAGAGUCUUCUGAAUGGCUGUCAGCUGGCUUUCCGUCCUCUUCUGUCCAUC .....((((((.(((((...............))))).))))))...((((......)))).....((((((((......(.((((..(((....)))...)))).)..))))))))... (-26.56 = -26.24 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:47 2006