Locus 2646

Sequence ID 2L_DroMel_CAF1
Location 7,405,725 – 7,405,820
Length 95
Max. P 0.593130
window4212

overview

Window 2

Location 7,405,725 – 7,405,820
Length 95
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 70.28
Mean single sequence MFE -14.90
Consensus MFE -7.43
Energy contribution -7.43
Covariance contribution -0.00
Combinations/Pair 1.10
Mean z-score -1.75
Structure conservation index 0.50
SVM decision value 0.12
SVM RNA-class probability 0.593130
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7405725 95 - 22407834
-----UUCAAUUUCCCUGGGUCGUUGCUAUCUGCUAAACUGUAUAUAACUUACCUUUUCCUUGAGCUCAGACACCAGCUUGUUGUGCUUCUCGAGCAAUU
-----..((((....(((((((...(((....(..(((..(((.......))).)))..)...)))...))).))))...))))(((((...)))))... ( -17.40)
>DroSec_CAF1 409 73 - 1
-----UUAAAUUUCCAUUGA----------------------GCUCAACUUACCUUUUCCUUGAGCUCAGAAACAAGUUUGUUGUGCUUCUCGAGCAAUU
-----.(((((((...((((----------------------((((((............))))))))))....)))))))...(((((...)))))... ( -16.70)
>DroSim_CAF1 548 73 - 1
-----UUAAAUUUCCAUUGA----------------------GCUCAACUUACCUUUUCCUUGAGCUCAGAAACCAGUUUGUUGUGCUUCUCGAGCAAUU
-----.((((((....((((----------------------((((((............)))))))))).....))))))...(((((...)))))... ( -15.60)
>DroYak_CAF1 549 90 - 1
ACCUAAUCAAUAUCUAUCU---------AUGCACUCAA-AGUAUUUAACUUACCUUCUCCUUGAGCUCAGAAACCAGCUUGUUGUGCUUCUCCAGCAACU
...................---------..((((...(-(((.....))))...........(((((........)))))...))))............. (  -9.90)
>consensus
_____UUAAAUUUCCAUUGA______________________ACUCAACUUACCUUUUCCUUGAGCUCAGAAACCAGCUUGUUGUGCUUCUCGAGCAAUU
................................................................(((((((....(((.......)))))).)))).... ( -7.43 =  -7.43 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:42 2006