| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,393,415 – 7,393,516 |
| Length | 101 |
| Max. P | 0.887500 |
| Location | 7,393,415 – 7,393,516 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 74.71 |
| Mean single sequence MFE | -28.27 |
| Consensus MFE | -14.69 |
| Energy contribution | -15.75 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.887500 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7393415 101 - 22407834 ----GGAACUGAAGGACACGAAAUGAACAAGUCACAUUCCGAACGGAGUCAGGCGAUAAUUGAUAUUUGAUUGUC-GUCACUUGUUGCUCGUCCUUCGGCAAAUGU ----....(((((((((..((....(((((((...(((((....)))))..(((((((((..(...)..))))))-))))))))))..)))))))))))....... ( -34.40) >DroSec_CAF1 4934 101 - 1 ----GGAAACGAAGGACACGAAAUGAACAAGUCACAUUCCGAACGGAGUCGGGAGAUAAUUGAUAUUUGAUUGUC-GUCACUUGUUGCUCGUCCUUCGGCAAAUGU ----.....((((((((..((....(((((((.((.((((((......))))))((((((..(...)..))))))-)).)))))))..))))))))))........ ( -32.80) >DroSim_CAF1 4943 101 - 1 ----GGAAACGAAGGACACGAAAUGAACAAGUCACAUUCCGAACGGAGUCAGGAGAUAAUUGAUAUUUGAUUGUC-GUCACUUGUUGCUCGUCCUUCGGCAAAUGU ----.....((((((((..((....(((((((.(((((((....))))).....((((((..(...)..))))))-)).)))))))..))))))))))........ ( -30.40) >DroEre_CAF1 5053 100 - 1 ----GGAACUGAAGGAUACGAAAUGAACCAGACACAUUCCGAU-UGAGUCAGGAGAUAAUUGAUAUUUGAUUGUC-GUCACUUGUUGCGCGUCCUUCGGCAAAUGU ----....((((((((..((.((..(.((.(((.((.......-)).))).)).((((((..(...)..))))))-.....)..)).))..))))))))....... ( -27.20) >DroAna_CAF1 7091 99 - 1 ----ACUUCCGAAGGACACA-AACGAGAAAAUAUCGUCCUGU-CUGGGCCAAGUGAUAAUUGAUGUUUUAUUGUU-GUCACUUGUUGCUCCGUCCUCUUCUGUUGU ----......((.(((((((-.((((.......))))..)))-..(((((((((((((((............)))-))))))))..)).))))))))......... ( -26.40) >DroPer_CAF1 4554 88 - 1 AGAUGGAACCCAAGGACAC-AAAUGAGCAAGUGACAUUUUG-----UGCCAAGUGAUAAUUGAUAUUUUAUUGUUUGCCAUU--UUGUUCG----------AGUGG .........(((.(((((.-(((((.(((((......))))-----)..((((..((((........))))..)))).))))--)))))).----------..))) ( -18.40) >consensus ____GGAACCGAAGGACACGAAAUGAACAAGUCACAUUCCGAACGGAGUCAGGAGAUAAUUGAUAUUUGAUUGUC_GUCACUUGUUGCUCGUCCUUCGGCAAAUGU .........((((((((.((.((((.........)))).))....((((((((.(((....((((......)))).))).))))..))))))))))))........ (-14.69 = -15.75 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:39 2006