Locus 2642

Sequence ID 2L_DroMel_CAF1
Location 7,391,609 – 7,391,703
Length 94
Max. P 0.596544
window4206

overview

Window 6

Location 7,391,609 – 7,391,703
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 73.49
Mean single sequence MFE -20.05
Consensus MFE -14.74
Energy contribution -13.85
Covariance contribution -0.89
Combinations/Pair 1.29
Mean z-score -0.75
Structure conservation index 0.73
SVM decision value 0.13
SVM RNA-class probability 0.596544
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7391609 94 - 22407834
CAGGGAGUUAUCCUGCUCCUGUUUUCACGAGAUUUCCGUCAGAGAGAGCGUGGAUCAAGUAAGAGGAAAAAUUUUCUUACAAAAGAUUUCUUUA
..((((((......))))))...((((((...(((((....).)))).))))))....(((((((((....))))))))).((((....)))). ( -26.10)
>DroSec_CAF1 2916 73 - 1
CAGGGAGUUAUCCUGCGCCUGUUUUCACGAGAUUUCCGUCAGAGAGAGCGUGGAUCAAGUAAGAAGAAAAAU---------------------A
((((..((......)).))))(((((((..((((..(((........)))..))))..))..))))).....---------------------. ( -14.70)
>DroSim_CAF1 2922 73 - 1
CAGGGAGUUAUCCUGCGCCUGUUUUCACGAGAUUUCCGUCAGAGAGAGCGUGGAUCAAGUAAGAAGAAAAAU---------------------A
((((..((......)).))))(((((((..((((..(((........)))..))))..))..))))).....---------------------. ( -14.70)
>DroEre_CAF1 3068 89 - 1
CAGGGAGCUAUCCUGCGCCUGUUUCCAUGAGAUUUCCGUCAGAGAGAGCGUGGAUCAAGUAAGAAGAAAU--AUAUUCAAGUACAAAA---GUA
((((..((......)).))))..((((((...(((((....).)))).))))))....(((.(((.....--...)))...)))....---... ( -19.30)
>DroYak_CAF1 3029 94 - 1
CAGGGAGUUAUCCUGCGCCUGUUUCCACGAGAUUUCCGUCAGGGAGAGCGUGGAUCAAGUAAGAAGAAAAGUACACUAAAAUAAAAUAAAUUUA
..((((....))))..((.((..((((((...(((((.....))))).)))))).)).)).................................. ( -20.60)
>DroAna_CAF1 2808 82 - 1
CAGGGAAUUGUCCUGCGCCUGUUUCCAUGAGAUUUCAGUCCGAGAGAAUGUGGACCAGGUGGGCUAUAAAGCUUUCC-AGGC-----U------
(((((.....))))).((((...((((((...((((.....))))...))))))...((..((((....))))..))-))))-----.------ ( -24.90)
>consensus
CAGGGAGUUAUCCUGCGCCUGUUUCCACGAGAUUUCCGUCAGAGAGAGCGUGGAUCAAGUAAGAAGAAAAAU_U_CU_A______________A
(((((.....)))))...((...((((((...((((.....))))...))))))...))................................... (-14.74 = -13.85 +  -0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:37 2006