Locus 2638

Sequence ID 2L_DroMel_CAF1
Location 7,372,892 – 7,372,984
Length 92
Max. P 0.970358
window4196 window4197

overview

Window 6

Location 7,372,892 – 7,372,984
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -26.00
Consensus MFE -26.00
Energy contribution -26.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.78
Structure conservation index 1.00
SVM decision value 1.66
SVM RNA-class probability 0.970358
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7372892 92 + 22407834
UGGACAUGGAACCUCAACGAUGGGGCGACCAAGUGAAACGAAACAAAUCAAGUCGCCCGGUCGCCGAGUCGCACAAUGACUGACAAUCGAAA
.................((((.((((((((..((((...((......))...))))..))))))).(((((.....)))))..).))))... ( -26.00)
>DroSec_CAF1 158411 92 + 1
UGGACAUGGAACCUCAACGAUGGGGCGACCAAGUGAAACGAAACAAAUCAAGUCGCCCGGUCGCCGAGUCGCACAAUGACUGACAAUCGAAA
.................((((.((((((((..((((...((......))...))))..))))))).(((((.....)))))..).))))... ( -26.00)
>DroSim_CAF1 165477 92 + 1
UGGACAUGGAACCUCAACGAUGGGGCGACCAAGUGAAACGAAACAAAUCAAGUCGCCCGGUCGCCGAGUCGCACAAUGACUGACAAUCGAAA
.................((((.((((((((..((((...((......))...))))..))))))).(((((.....)))))..).))))... ( -26.00)
>DroEre_CAF1 162095 92 + 1
UGGACAUGGAACCUCAACGAUGGGGCGACCAAGUGAAACGAAACAAAUCAAGUCGCCCGGUCGCCGAGUCGCACAAUGACUGACAAUCGAAA
.................((((.((((((((..((((...((......))...))))..))))))).(((((.....)))))..).))))... ( -26.00)
>DroYak_CAF1 165669 92 + 1
UGGACAUGGAACCUCAACGAUGGGGCGACCAAGUGAAACGAAACAAAUCAAGUCGCCCGGUCGCCGAGUCGCACAAUGACUGACAAUCGAAA
.................((((.((((((((..((((...((......))...))))..))))))).(((((.....)))))..).))))... ( -26.00)
>consensus
UGGACAUGGAACCUCAACGAUGGGGCGACCAAGUGAAACGAAACAAAUCAAGUCGCCCGGUCGCCGAGUCGCACAAUGACUGACAAUCGAAA
.................((((.((((((((..((((...((......))...))))..))))))).(((((.....)))))..).))))... (-26.00 = -26.00 +   0.00)

alignment

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secondary structure

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dotplot

Postscript

Window 7

Location 7,372,892 – 7,372,984
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -29.50
Consensus MFE -29.50
Energy contribution -29.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.72
Structure conservation index 1.00
SVM decision value 1.49
SVM RNA-class probability 0.958754
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7372892 92 - 22407834
UUUCGAUUGUCAGUCAUUGUGCGACUCGGCGACCGGGCGACUUGAUUUGUUUCGUUUCACUUGGUCGCCCCAUCGUUGAGGUUCCAUGUCCA
....(((.....)))...(((.((((((((((..(((((((((((..((...))..)))...))))))))..))))))))..)))))..... ( -29.50)
>DroSec_CAF1 158411 92 - 1
UUUCGAUUGUCAGUCAUUGUGCGACUCGGCGACCGGGCGACUUGAUUUGUUUCGUUUCACUUGGUCGCCCCAUCGUUGAGGUUCCAUGUCCA
....(((.....)))...(((.((((((((((..(((((((((((..((...))..)))...))))))))..))))))))..)))))..... ( -29.50)
>DroSim_CAF1 165477 92 - 1
UUUCGAUUGUCAGUCAUUGUGCGACUCGGCGACCGGGCGACUUGAUUUGUUUCGUUUCACUUGGUCGCCCCAUCGUUGAGGUUCCAUGUCCA
....(((.....)))...(((.((((((((((..(((((((((((..((...))..)))...))))))))..))))))))..)))))..... ( -29.50)
>DroEre_CAF1 162095 92 - 1
UUUCGAUUGUCAGUCAUUGUGCGACUCGGCGACCGGGCGACUUGAUUUGUUUCGUUUCACUUGGUCGCCCCAUCGUUGAGGUUCCAUGUCCA
....(((.....)))...(((.((((((((((..(((((((((((..((...))..)))...))))))))..))))))))..)))))..... ( -29.50)
>DroYak_CAF1 165669 92 - 1
UUUCGAUUGUCAGUCAUUGUGCGACUCGGCGACCGGGCGACUUGAUUUGUUUCGUUUCACUUGGUCGCCCCAUCGUUGAGGUUCCAUGUCCA
....(((.....)))...(((.((((((((((..(((((((((((..((...))..)))...))))))))..))))))))..)))))..... ( -29.50)
>consensus
UUUCGAUUGUCAGUCAUUGUGCGACUCGGCGACCGGGCGACUUGAUUUGUUUCGUUUCACUUGGUCGCCCCAUCGUUGAGGUUCCAUGUCCA
....(((.....)))...(((.((((((((((..(((((((((((..((...))..)))...))))))))..))))))))..)))))..... (-29.50 = -29.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:28 2006