Locus 2633

Sequence ID 2L_DroMel_CAF1
Location 7,356,455 – 7,356,546
Length 91
Max. P 0.794727
window4190

overview

Window 0

Location 7,356,455 – 7,356,546
Length 91
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 82.62
Mean single sequence MFE -30.47
Consensus MFE -18.76
Energy contribution -19.27
Covariance contribution 0.50
Combinations/Pair 1.28
Mean z-score -2.83
Structure conservation index 0.62
SVM decision value 0.60
SVM RNA-class probability 0.794727
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7356455 91 + 22407834
ACACCAAAG--UUGAGCCUUUUGGCCAACCUUUGUGGUGGGCCAUU---GUGGCCGUUUUCUGGG-CUCAACACCACAAAGGACUACCGCGCUAAUU
.........--(((.(((....))))))(((((((((((((((...---..))))(((.....))-)....)))))))))))............... ( -33.20)
>DroSec_CAF1 141930 91 + 1
ACACCAAAG--UUGAGCCUUUUGGCCAACCUUUGUGGUGGGCCAUU---GUGGCCGUUUUCAGGG-CUCAACACCACAAAGGACUACCGCGCUAAUU
.........--(((.(((....))))))(((((((((((((((...---..))))(((.....))-)....)))))))))))............... ( -33.20)
>DroSim_CAF1 148964 91 + 1
ACACCAAAG--UUGAGCCUUUUGGCCAACCUUUGUGGUGGGCCAUU---GUGGCCGUUUUCUGGG-CUCAACACCACAAAGGACUACCGCGCUAAUU
.........--(((.(((....))))))(((((((((((((((...---..))))(((.....))-)....)))))))))))............... ( -33.20)
>DroEre_CAF1 145159 89 + 1
ACACCAAAG--CUGAACCUUUU-GCCAACCUUUGUGGUGGCCUAUU---GUGGCCGCUUUCUG--GCUCAACGCCACAAAGGACUACCGCGCUAAUU
.......((--(((........-..)).((((((((((((((....---..))))(((....)--)).....))))))))))........))).... ( -27.80)
>DroYak_CAF1 147920 95 + 1
ACACCAAAG--UUGAACCUUCUGGCCAACCUUUGUGUUGGGCUAUUGUUGUGGCCGUUUUCUGUGCCCAAACUCCACAAAGGACUACCGCGCUAAUU
((((.((.(--(((..((....)).)))).)).))))..((((((....)))))).......((((......(((.....))).....))))..... ( -21.80)
>DroAna_CAF1 150499 81 + 1
ACACCAAAGCGUUGCGCCUU-----------UUGUGGUGGUUUAUU---GUGGCUGGACUUUUAA-CUCU-GGCCACAAAGGACUACCGCACUAAUU
........(((...)))...-----------.((((((((((..((---(((((..((.......-.)).-.)))))))..))))))))))...... ( -33.60)
>consensus
ACACCAAAG__UUGAGCCUUUUGGCCAACCUUUGUGGUGGGCCAUU___GUGGCCGUUUUCUGGG_CUCAACACCACAAAGGACUACCGCGCUAAUU
............................(((((((((((((((((....))))))(....)..........)))))))))))............... (-18.76 = -19.27 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:21 2006