Locus 2628

Sequence ID 2L_DroMel_CAF1
Location 7,334,942 – 7,335,036
Length 94
Max. P 0.980581
window4184

overview

Window 4

Location 7,334,942 – 7,335,036
Length 94
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 68.14
Mean single sequence MFE -20.86
Consensus MFE -16.98
Energy contribution -17.26
Covariance contribution 0.28
Combinations/Pair 1.12
Mean z-score -0.88
Structure conservation index 0.81
SVM decision value 1.87
SVM RNA-class probability 0.980581
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7334942 94 + 22407834
UACAUAUACA-AUAGCACUCACU------CACUAAACAAAGU----AAAUUAAAACAGCUCAACGGGCCAAAAUUUGGUUUGUUGCCGCUGCAUUUGGCGGCUUC
..........-............------.....((((((.(----(((((......(((.....)))...)))))).))))))((((((......))))))... ( -20.80)
>DroPse_CAF1 157545 79 + 1
GAGAGAGA-------UACCCACA------C-----AGAAAGA----AUACGAGUAC----GAACGGGCCAGAGUUUGGUUUGUUGCCGCUGCAUUUGGCGGCUUC
........-------........------.-----.......----..........----.((((((((((...))))))))))((((((......))))))... ( -19.50)
>DroEre_CAF1 130655 95 + 1
UAUGCGCAUAUACAGCACUCACU------CACUAAACAAAGU----AAAUUAAAACAGCUCAACGGGCCAGAAUUUGGUUUGUUGCCGCUGCAUUUGGCGGCUUC
..(((.........)))......------.....((((((.(----(((((......(((.....)))...)))))).))))))((((((......))))))... ( -23.50)
>DroAna_CAF1 134833 101 + 1
CCCCUAUAU-UAUAAUACUCAUUUUGGUUUAAAAAACAAAACACAAAAAUUCCACCAGCUCAGCGGGCCAGAAUUUGGUUUGUUGCCGCUGCAUUUG---GCUUC
.........-...........(((((((((........)))).)))))...(((.((((.(((((((((((...)))))))))))..))))....))---).... ( -21.00)
>DroPer_CAF1 159395 79 + 1
GAGAGAGA-------UACCCACA------C-----AGAAAGA----AUACGAGUAC----GAACGGGCCAGAGUUUGGUUUGUUGCCGCUGCAUUUGGCGGCUUC
........-------........------.-----.......----..........----.((((((((((...))))))))))((((((......))))))... ( -19.50)
>consensus
GACAGAGA___A_A_UACUCACU______CA__AAACAAAGA____AAAUUAAAACAGCUCAACGGGCCAGAAUUUGGUUUGUUGCCGCUGCAUUUGGCGGCUUC
.............................................................((((((((((...))))))))))((((((......))))))... (-16.98 = -17.26 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:15 2006