Locus 2624

Sequence ID 2L_DroMel_CAF1
Location 7,298,373 – 7,298,475
Length 102
Max. P 0.859217
window4180

overview

Window 0

Location 7,298,373 – 7,298,475
Length 102
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 80.36
Mean single sequence MFE -30.92
Consensus MFE -12.09
Energy contribution -14.39
Covariance contribution 2.31
Combinations/Pair 1.23
Mean z-score -3.32
Structure conservation index 0.39
SVM decision value 0.82
SVM RNA-class probability 0.859217
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7298373 102 + 22407834
UUGGCCACAA-AAACUGUGAA---AUGCUGUGAAAAGAACGCGCGGC-CAGCAGUAGAGGUCCGAUG--ACU-UCUCUUCGGCCAGCAAAAAGUAAUUUUUGCUAAAUCG
..((((....-..(((((...---..((((((.........))))))-..)))))(((((((....)--)))-)))....))))((((((((....))))))))...... ( -36.40)
>DroSec_CAF1 91278 100 + 1
UUGGCCACAA-AAACUGUGAA---AUGCUGUGAAAAGAACGCGCGGC-CAGCAGUAGAGGUCCGAAG--ACU-UC--UUUGGUCAGCAAAAAGUAAUUUUUGCUAAAUCG
..(((((...-..(((((...---..((((((.........))))))-..)))))(((((((....)--)))-))--).)))))((((((((....))))))))...... ( -34.20)
>DroSim_CAF1 98091 101 + 1
UUGGCCACAA-AAACUGUGAA---AUGCUGUGAAAAGAACGCGCGGCCCAGCAGUAGAGGUCCGAAG--ACU-UC--UUUGGCCAGCAAAAAGUAAUUUUUGCUAAAUCG
..(((((...-..(((((...---..((((((.........))))))...)))))(((((((....)--)))-))--).)))))((((((((....))))))))...... ( -37.30)
>DroEre_CAF1 93057 98 + 1
UUGGCCACAA-AAACUGUGAA---AUGCUGUGAAAAGAACGCGCGGC-CAGCAGCAGAGGUCCAAAA--G---UC--UGCGGCCAGCAAAAAGUAAUUUUUGCUAAAUCG
..((((....-....(((...---..((((((.........))))))-..)))(((((..(....).--.---))--)))))))((((((((....))))))))...... ( -30.90)
>DroAna_CAF1 96926 97 + 1
AUGGCAGCAAAAAACUGUGCAGCAUUGCUGUGAAAAGAACGCACCAACCA-----AGAGGACCAAAA--ACU-UU--CUUGG---GCAAAAAGUAAUUUUUGCUAAAUCG
.....(((((((((((.(((....(((.((((.......)))).)))(((-----(((((.......--..)-))--)))))---)))...)))..))))))))...... ( -24.10)
>DroPer_CAF1 118687 98 + 1
UUGGAAGCAA-AAACUGUGAA---AUGCUGUGCAAAGAACGC-------AGCAGCAGAAGACCAGAAAGACAGUC-CAGUCUCAGACAAAAAGUAAUUUUUGCUAAAUCG
.....(((((-(((((((...---.(((((((.......)))-------))))))))..........((((....-..))))..............))))))))...... ( -22.60)
>consensus
UUGGCCACAA_AAACUGUGAA___AUGCUGUGAAAAGAACGCGCGGC_CAGCAGUAGAGGUCCAAAA__ACU_UC__UUUGGCCAGCAAAAAGUAAUUUUUGCUAAAUCG
((((.((((......))))......((((((...................)))))).....))))...................((((((((....))))))))...... (-12.09 = -14.39 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:11 2006