Locus 2623

Sequence ID 2L_DroMel_CAF1
Location 7,297,837 – 7,297,927
Length 90
Max. P 0.775982
window4179

overview

Window 9

Location 7,297,837 – 7,297,927
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 79.26
Mean single sequence MFE -16.33
Consensus MFE -12.20
Energy contribution -12.53
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.37
Structure conservation index 0.75
SVM decision value 0.54
SVM RNA-class probability 0.775982
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7297837 90 + 22407834
AAUAAAUAAAAAACAGGCGUACAAAUGUUAAACAUUUGCCACGAUGCCAUGACGAGAGUUGACUGUCCAAAA-AGGAUCGAAGUUAGUUGA
...........(((.(((((.((((((.....)))))).....)))))..(((....)))((((((((....-.))))...)))).))).. ( -19.00)
>DroPse_CAF1 116386 88 + 1
UAAAAGAAAAAAACAGGCGUACAAAUGUUAAACAUUUGCCACGAUGCCAUGACGAGAGUUGACUGCU-UA-A-AGGAUCGAACGAUGGAGC
...............(((((.((((((.....)))))).....)))))..(((....)))....(((-(.-.-...(((....))).)))) ( -16.10)
>DroGri_CAF1 105604 78 + 1
AAUAUAAAAAAAACAGGCGUACAAAUGUUAAACAUUUGCCACGAUGCCAUGACGAGAGCUGACUG--CAA-A-ACGAU----GCU-----C
.............(((((((.((((((.....)))))).....))))).))....((((......--...-.-.....----)))-----) ( -14.46)
>DroMoj_CAF1 128921 75 + 1
AACACACAAAAAACAGGCGUACAAAUGUUAAACAUUUGCCACGAUGCCAUGACGAGAGCUGACUG--CAA-AAGCAGA-------------
.............(((((((.((((((.....)))))).....))))).))...........(((--(..-..)))).------------- ( -16.40)
>DroAna_CAF1 96345 87 + 1
AAUAAAUAAAAAACAGGCGUACAAAUGUUAAACAUUUGCCACGAUGCCAUGACGAGAGUUGACU--CCAA-A-AUGAUCGAUCCAAGAGGG
.............(((((((.((((((.....)))))).....))))).)).(((..(((....--....-)-))..)))..((....)). ( -15.90)
>DroPer_CAF1 118061 88 + 1
UAAAAGAAAAAAACAGGCGUACAAAUGUUAAACAUUUGCCACGAUGCCAUGACGAGAGUUGACUGCU-UA-A-AGGAUCGAACGAUGGAGC
...............(((((.((((((.....)))))).....)))))..(((....)))....(((-(.-.-...(((....))).)))) ( -16.10)
>consensus
AAUAAAAAAAAAACAGGCGUACAAAUGUUAAACAUUUGCCACGAUGCCAUGACGAGAGUUGACUG__CAA_A_AGGAUCGAACCA_G__GC
...............(((((.((((((.....)))))).....)))))..(((....)))............................... (-12.20 = -12.53 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:10 2006