| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,280,611 – 7,280,702 |
| Length | 91 |
| Max. P | 0.776168 |
| Location | 7,280,611 – 7,280,702 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 74.93 |
| Mean single sequence MFE | -24.67 |
| Consensus MFE | -10.62 |
| Energy contribution | -11.40 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.776168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7280611 91 + 22407834 UCCUGCUGCCACUUAAGGUAACCAACUGG-AGAGC-CGGGAAAGGGCCCAGUGCUAGACACAUUUGGGCCAAAAAAAAAAAAACUAA---A-----CUAAG-- ((((((((((......)))..((....))-..)).-)))))...(((((((((.....)))...)))))).................---.-----.....-- ( -23.80) >DroPse_CAF1 96171 86 + 1 UGCUGCUGCCACUUAAGGUAACCAAGCAGCAGAG-----GCAAGG--CGGCAGCUAGACACAUUUGGCAACAAAAAAAGA----------AGAGGAUGAAGAG .(((((((((......((...)).....((....-----))..))--)))))))........((((....))))......----------............. ( -24.10) >DroSec_CAF1 73778 77 + 1 UCCUGCUGCCACUUAAGGUAACCAACUGG-AGAGC-CGGGAAAGGGCCGAGGGCUAGACACAUUUGGGCCAAAAAAA----------------------AG-- ((((((((((......)))..((....))-..)).-)))))..((.((((((........).))))).)).......----------------------..-- ( -19.60) >DroEre_CAF1 74698 88 + 1 -CCUGCUGCCACUUAAGGUAACCAACUGG-AGGGC-CGGGAAAGGGCCGAGUGCUAGACACAUUUGGGCCAAAAAAAUGA----------ACGGGAAGCAG-- -.((((((((......)))..((..((((-....)-)))....((.(((((((.......))))))).))..........----------..))..)))))-- ( -27.60) >DroYak_CAF1 75198 89 + 1 UCCUGCUGCCACUUAAGGUAACCAACUGG-AUAGC-CGGCAAAGGGCCGAGUGCUAGACACAUUUGGGCCAAAAAAAAAA----------ACGGGAAGCAG-- ..((((((((......)))..((..((((-....)-)))....((.(((((((.......))))))).))..........----------..))..)))))-- ( -26.70) >DroAna_CAF1 75972 93 + 1 GCCUGCUACCACUUAAGGUAACCAACUGG-CAAGCUCGUGGGAGGGCCAAGUGCUAGACACAUUUGGCCCCAAAAAAAAA-------UGGAGAGAAAAAAA-- .((..(((((......)))).((....))-.......)..)).((((((((((.......))))))))))..........-------..............-- ( -26.20) >consensus UCCUGCUGCCACUUAAGGUAACCAACUGG_AGAGC_CGGGAAAGGGCCGAGUGCUAGACACAUUUGGGCCAAAAAAAAAA__________A__GGAAGAAG__ ......((((......)))).......................((.(((((((.......))))))).))................................. (-10.62 = -11.40 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:08 2006