Locus 262

Sequence ID 2L_DroMel_CAF1
Location 743,538 – 743,638
Length 100
Max. P 0.898628
window419

overview

Window 9

Location 743,538 – 743,638
Length 100
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 78.30
Mean single sequence MFE -31.04
Consensus MFE -16.25
Energy contribution -16.03
Covariance contribution -0.22
Combinations/Pair 1.18
Mean z-score -2.34
Structure conservation index 0.52
SVM decision value 1.00
SVM RNA-class probability 0.898628
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 743538 100 - 22407834
UU----GUGGUA-UCCGCAGGUAGAAGA-CA---AUCCUCUACA-ACGGCUACAGCAGUGCAACGCAUUUUGAAACUGUUGAUGCAACGGCAGCAGAAAUUGCUGCGGAA
..----......-((((((((((((.(.-..---..).))))).-...(((.(((((((.(((......)))..)))))))..((....)))))........))))))). ( -30.80)
>DroVir_CAF1 8187 98 - 1
----------CAGCCGGCAGUUUGAAGG-UAAAAAACCACUAAA-ACGGCUACAGCGGUGCAACGCAUACUGCAACUGUUGAUGCAACGGCAGCUCAAGCUGCUGCGAAA
----------.(((((....((((..((-(.....)))..))))-.))))).((((((((((........))).)))))))......(((((((....)))))))..... ( -33.90)
>DroGri_CAF1 6523 95 - 1
----------CAUUCGACAGGUUGAAGG-CA---AACCACUACA-ACGGCUACAGCUGUGCAACGCAUUCUGCAACUGUUGAUGCAACAGCAGCUCAAAUUGCUGCGAAA
----------...(((((((((((..((-..---..))......-(((((....))))).))))((.....))..))))))).......(((((.......))))).... ( -29.60)
>DroMoj_CAF1 7476 96 - 1
----------UAACCGGCAGGUUGAAGG-CA---AACCACUAAACACGGCUACAGCGGUGCAACGCAUUCAGCAACUGUUGAUGCAACAGCAGCUCAAACUGCUGCGAAA
----------...(((((((.((((..(-(.---..........(((.((....)).)))....((((.((((....))))))))....))...)))).)))))).)... ( -30.00)
>DroAna_CAF1 7822 103 - 1
UCACCCGUUG-A-ACUACAGGUAGACAG-CA---AUCCACUACA-ACGGCUACAGCGGUGCAGCGCAUUCUGAAACUGUUGAUGCAACGGCAGCAGAAGCUGCUGCGAAA
....((((((-.-.(((....)))..((-(.---..........-...))).))))))((((((((.(((((...((((((...))))))...))))))).))))))... ( -33.04)
>DroPer_CAF1 8681 97 - 1
CU----CUGGU-----GCAGGUAGAAAAGCA---AUCCACUACA-ACGGCUACAGCGGUGCAACGCAUUCUGAAACUGUUGAUGCAACGCCAGCAGAAACUGCUGCGCCA
..----..(((-----((((.(((.......---........((-((((...(((.(((((...))))))))...)))))).(((.......)))....)))))))))). ( -28.90)
>consensus
__________UA_CCGGCAGGUAGAAGG_CA___AACCACUACA_ACGGCUACAGCGGUGCAACGCAUUCUGAAACUGUUGAUGCAACGGCAGCACAAACUGCUGCGAAA
..............................................((((..(((((((...............)))))))..))..((((((......))))))))... (-16.25 = -16.03 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:29 2006