Locus 2616

Sequence ID 2L_DroMel_CAF1
Location 7,255,057 – 7,255,152
Length 95
Max. P 0.892235
window4168

overview

Window 8

Location 7,255,057 – 7,255,152
Length 95
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 77.09
Mean single sequence MFE -31.00
Consensus MFE -18.85
Energy contribution -19.18
Covariance contribution 0.33
Combinations/Pair 1.14
Mean z-score -1.87
Structure conservation index 0.61
SVM decision value 0.97
SVM RNA-class probability 0.892235
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7255057 95 - 22407834
CGGUCGGUUACAUUGAUCGCCAGUAGAUAUCAGUGUCAGU------------GGCAGUGGGCCGCCACUCGAGGCCGUUUC-AACAGCUUCAAACCCGACCAAACCGA
.((((((..((((((((..(.....)..)))))))).(((------------(((.(....).)))))).(((((.((...-.)).)))))....))))))....... ( -33.40)
>DroSec_CAF1 48102 95 - 1
CGGUCGGUUACAUUGAUCGCCAGUAGAUAUCAGUGUCAGU------------GGCAGUGGGCCGCCACUCGAGGCCGUUUC-AACAGCUUCAAACUCGACCAAACCGA
.((((((((((((((((..(.....)..)))))))).(((------------(((.(....).)))))).(((((.((...-.)).))))).))).)))))....... ( -32.30)
>DroSim_CAF1 54712 95 - 1
CGGUCGGUUACAUUGAUCGCCAGUAGAUAUCAGUGUCAGU------------GGCAGUGGGCCGCCACUCGAGGCCGUUUC-AACAGCUUCAAACUCGACCAAACCGA
.((((((((((((((((..(.....)..)))))))).(((------------(((.(....).)))))).(((((.((...-.)).))))).))).)))))....... ( -32.30)
>DroYak_CAF1 49138 104 - 1
CAGUCGGUUACAUUGAUCGCAAGUAGAUAUCAGUGGCAGUGGCAGUGACACUGGCAGUGGG---ACACUUGAGGCCGUUUC-AACAGCCUCAAACCUGACCAAACCGC
....(((((.((((((((....).....))))))).((.((.(((.....))).)).))((---.((.(((((((.((...-.)).)))))))...)).)).))))). ( -33.00)
>DroAna_CAF1 49571 82 - 1
CGGUCGGUUACAUUGAUGACCA----AUAUCAGUGUCAGU------------GUC---------GCACCUGAGGCCGUUGA-AACAGCUUCAAACCUGACCGAACUGA
((((((((((((((((((....----.)))))))))....------------...---------.....((((((.((...-.)).)))))))))).)))))...... ( -26.70)
>DroPer_CAF1 55576 86 - 1
CGGAGGGUUACAUUGAUCGC----ACACAUCAGUGUCAA---------------CAGUGU-C--CGCCCUGAGGCAGACUCAAACAGCCUCAAACCCGACAGAACCGA
((((((((.((((((...((----((......))))...---------------))))))-.--.)))))(((((...........))))).............))). ( -28.30)
>consensus
CGGUCGGUUACAUUGAUCGCCAGUAGAUAUCAGUGUCAGU____________GGCAGUGGGC__CCACUCGAGGCCGUUUC_AACAGCUUCAAACCCGACCAAACCGA
.((((((..((((((((...........))))))))..................................(((((.((.....)).)))))....))))))....... (-18.85 = -19.18 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:00 2006