| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,247,392 – 7,247,500 |
| Length | 108 |
| Max. P | 0.589959 |
| Location | 7,247,392 – 7,247,500 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.40 |
| Mean single sequence MFE | -26.68 |
| Consensus MFE | -9.08 |
| Energy contribution | -9.87 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.589959 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7247392 108 - 22407834 ----UUUAUGGCGGAUUAAUAACACUUUUGCUGUUAGCAGC------AUGAUGGAUUAACCAU-UAACAUCUCGCCAUGUGUUUGAGCAAAUCUAAUUAAGUGUUGGG-UUAACUUAUCC ----..((((((((((............(((((....))))------)((((((.....))))-))..))).)))))))....((((..((((((((.....))))))-))..))))... ( -30.60) >DroSec_CAF1 40510 109 - 1 ----UUUAUGGCGGAUUAAUAACACUUUUGCUCUUAACAGC------AUGAUGGAUUAACCAU-UAACAUCUCGCCAUGUGUUUAAGGAGAUCUAAUUAAGUGUAACCCAACACUUAUCC ----..((((((((((............((((......)))------)((((((.....))))-))..))).)))))))..................(((((((......)))))))... ( -25.60) >DroSim_CAF1 46649 108 - 1 ----UUUAUGGCGGAUUAAUAACACUUUUGCUGUUAGCAGC------AUGAUGGAUUAACCAU-UAACAUCUCGCCAUGUGUUUGAGGAAAUCCAAUUAAGUGUUCGG-UUAACUUAUCC ----..((((((((((............(((((....))))------)((((((.....))))-))..))).)))))))....((((..((((.(((.....))).))-))..))))... ( -28.20) >DroEre_CAF1 41385 108 - 1 ----UUUAUGGCGGAUUAAUAACACUUUUGCUGUUACCAGC------AUGCUGGAUUAACCAU-UAACAUCUCACCAUGUGUUAGAGGAAAUCUAAUUAGGUGUUGGU-UCAACUAAUAC ----....(((..((....((((((((.(((((....))))------)...((((((..((.(-((((((........))))))).)).))))))...))))))))..-))..))).... ( -25.70) >DroYak_CAF1 41012 108 - 1 ----UUUAUGGCGGAUUAAUAACACUUUUGCUGUUACCAGC------AUGAUGGAUUAACCGU-UAACAUCUCACCAUGUUUUUCCGGAAAUCUAAUUAAGUGUUGGU-UCAACUUAUCC ----.....((..((....((((((((.(((((....))))------)...((((((..(((.-.(((((......)))))....))).))))))...))))))))..-))..))..... ( -23.00) >DroAna_CAF1 40872 113 - 1 GCUGUGUAGUUUGGAUUAAUGAAUCCUUGGAAAUUACCUGUUUCGAGGUGGUGUAUUAAUCAUAUUACAUGA----AUACACAUCCAGGACCUUAAUGAGCUAAUG---UUAUUACAUAC ..((((((((((((.(((.(((.((((.(((...(((((......)))))((((((...((((.....))))----)))))).)))))))..))).))).))))..---..)))))))). ( -27.00) >consensus ____UUUAUGGCGGAUUAAUAACACUUUUGCUGUUACCAGC______AUGAUGGAUUAACCAU_UAACAUCUCGCCAUGUGUUUGAGGAAAUCUAAUUAAGUGUUGGG_UUAACUUAUCC ...................((((((((..((((....))))..........((((((..(......((((......))))......)..))))))...)))))))).............. ( -9.08 = -9.87 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:59 2006