Locus 2613

Sequence ID 2L_DroMel_CAF1
Location 7,228,383 – 7,228,485
Length 102
Max. P 0.591779
window4163

overview

Window 3

Location 7,228,383 – 7,228,485
Length 102
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 82.63
Mean single sequence MFE -26.52
Consensus MFE -20.51
Energy contribution -20.85
Covariance contribution 0.34
Combinations/Pair 1.06
Mean z-score -1.60
Structure conservation index 0.77
SVM decision value 0.12
SVM RNA-class probability 0.591779
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7228383 102 - 22407834
-----------GUCUUUAUAUUCCUUUAACAUAUAAUUAAUCAUAAAAUCCUGUGGAGAGCUACCAUCAAACUCCGAUGGUUCUUCAGUUGCAUUUGUUGAU------UUGAUGGUAGA
-----------.((((((((....((((...............))))....)))))))).((((((((((((..(((..((.........))..)))..).)------)))))))))). ( -18.76)
>DroSec_CAF1 22257 119 - 1
CUUUCCUCCACGUCUUUAAGUUCCCUUAACAUGUAAUCUAUCAUAAAUUCAUAUGGAGAGCUACCAUCAAACUGCGGUGGUUCUUCGGUUGCAUCUGUUGAUUCCGAUUCGAUGGUAGA
.........((((..(((((....))))).))))..((((((((....((....(((((((((((..........)))))))))))((...((.....))...))))....)))))))) ( -30.40)
>DroSim_CAF1 23461 119 - 1
CUUUCCUCCACGUCUUUAAGUUCCCUUAACAUGUAAUCUAUCAUAAAUUCAUAUGGAGAGCUACCAUCAAACUGCGGUGGUUCUUCGGUUGCAUCUGUUGAUUCCGAUUCGAUGGUAGA
.........((((..(((((....))))).))))..((((((((....((....(((((((((((..........)))))))))))((...((.....))...))))....)))))))) ( -30.40)
>consensus
CUUUCCUCCACGUCUUUAAGUUCCCUUAACAUGUAAUCUAUCAUAAAUUCAUAUGGAGAGCUACCAUCAAACUGCGGUGGUUCUUCGGUUGCAUCUGUUGAUUCCGAUUCGAUGGUAGA
..........((((...........(((((((((((((....(((......)))(((((((((((..........))))))))))))))))))..)))))).........))))..... (-20.51 = -20.85 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:55 2006