| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,226,981 – 7,227,095 |
| Length | 114 |
| Max. P | 0.786028 |
| Location | 7,226,981 – 7,227,095 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 71.73 |
| Mean single sequence MFE | -48.60 |
| Consensus MFE | -23.67 |
| Energy contribution | -27.37 |
| Covariance contribution | 3.70 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.786028 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7226981 114 - 22407834 AUUGGCGCGCAUUUUCCCCUGGGGAAAAGGCAGCCGGAGCAGGGUGGUGACCAAGCCGCCGGGCCUUGAUGAUGGAAUCGUUGGGUCUGGUGGUGCCGUUGGCGCUGGACUCAU ..((((..((.(((((((...))))))).)).))))((((..((((.((((...((((((((((((.((((((...))))))))))))))))))...)))).)))).).))).. ( -52.30) >DroPse_CAF1 28306 102 - 1 UGUUCAGAAAUUUUUACCCUGUUUCUUCGGUGGUCGCGGCCAGCCCGACACCAAGG---CUGGUCUUGAAGGUGGC---------GCUGGUAAUGGCGUCGGCCUCGGCCUGAU ...((((........((((((......))).))).((((((((((.........))---)))))).(((.((((((---------(((......)))))).)))))))))))). ( -37.20) >DroSim_CAF1 21995 114 - 1 AUUGGCGCGCAUUUUCCCCUGGGGAAAAGGCAGCCGGGGCAGGGUGGUGACCAAGCCGCCGGGCCUCGAUGAUGGAAUCGUUGGGUCUGGUGGUGCCGUUGGCGCUGGACUCAU .(..((..((.(((((((...))))))).)).((((((((..(((....)))..(((((((((((.(((((((...))))))))))))))))))))).)))))))..)...... ( -56.70) >DroEre_CAF1 21556 114 - 1 AUUGGCGCGCAUUUUCCCCUGGGGAAAAGGCAGCCGGGGCAGGGUGGUGACCAAGCCGCCGGGCCUUGAUGAUGGAAUCGUUGGGUCUGGCGGUGCCGUUGGCGCUGGACUCAU .(..((..((.(((((((...))))))).)).((((((((..(((....)))..((((((((((((.((((((...))))))))))))))))))))).)))))))..)...... ( -55.70) >DroYak_CAF1 21497 114 - 1 AUUGGCGCGCAUUUUCCCGUGGGGAAAGGGCAGCCGGGGCAGGGUGGUGACCAAGCCGUCGGGCCUCGAUGAUGGAGUCGUUGGGUCUGGUGGUGCCGUUGGCGCUGGACUCAU .(..((((.(.((((((....))))))).)).((((((((..(((....)))..(((..((((((.(((((((...)))))))))))))..)))))).)))))))..)...... ( -52.50) >DroPer_CAF1 26533 102 - 1 UGUUCAGAAAUUUUUACCCUGUUUCUUCGGUGGUCGCGGCCAGCCCGACACCAAGG---CUGGUCUUGAAGGUGGC---------GCUGGUAAUGGCGUCGGCCUCGGCCUGAU ...((((........((((((......))).))).((((((((((.........))---)))))).(((.((((((---------(((......)))))).)))))))))))). ( -37.20) >consensus AUUGGCGCGCAUUUUCCCCUGGGGAAAAGGCAGCCGGGGCAGGGUGGUGACCAAGCCGCCGGGCCUUGAUGAUGGAAUCGUUGGGUCUGGUGGUGCCGUUGGCGCUGGACUCAU ........((.((((((.....)))))).))...((((((..((((((......))))))..)))))).............(((((((((((.(......).))))))))))). (-23.67 = -27.37 + 3.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:54 2006