Locus 2607

Sequence ID 2L_DroMel_CAF1
Location 7,210,128 – 7,210,230
Length 102
Max. P 0.738483
window4155

overview

Window 5

Location 7,210,128 – 7,210,230
Length 102
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 84.22
Mean single sequence MFE -32.74
Consensus MFE -19.66
Energy contribution -20.57
Covariance contribution 0.92
Combinations/Pair 1.09
Mean z-score -3.49
Structure conservation index 0.60
SVM decision value 0.44
SVM RNA-class probability 0.738483
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7210128 102 - 22407834
UUGUGCUCGGGGACCCUUUUUC--ACCCACUUGGCAUCUGUCAGAUUUAUGACAGUGCCGCUUGACACAGUGCUGGGAUUUUUCCAGCACACCCGCCACCUUUU
..(((..((((...........--...((..(((((.((((((......)))))))))))..)).....(((((((((...))))))))).)))).)))..... ( -39.30)
>DroPse_CAF1 7393 91 - 1
CCGAGCUCUG-GACCCUUUUUUGCGGCCACUUGGCAUCUGUCAGAUUUAUGACAGACUCGCUUGACACAACG----GCCUUUGAAAUG------CC--CCCACU
.(((((....-..............(((....))).(((((((......)))))))...))))).......(----((.........)------))--...... ( -22.60)
>DroSec_CAF1 4251 96 - 1
UUGUGCUCGGGGACCCUUUUUC--ACCCACUUGGCAUCUGUCAGAUUUAUGACAGUGCCGCUUGACACAGUGCUGGGAGUUUUCCAAG------CCCACCUACU
.((((.(((((((.......))--.)))....((((.((((((......))))))))))....))))))(.(((.((......)).))------).)....... ( -30.90)
>DroSim_CAF1 4267 96 - 1
UUGUGCUCGGGCACCCUUUUUC--ACCCACUUGGCAUCUGUCAGAUUUAUGACAGUGCCGCUUGACACAGUGCUGGGAUUUUUCCAAG------CCCACCUACU
.((((.((((((..........--........((((.((((((......))))))))))))))))))))(.(((.(((....))).))------).)....... ( -30.36)
>DroEre_CAF1 4284 93 - 1
UUGUGCUCGGGGACCCUUUUUC--ACCCACUUGGCAUCUGUCAGAUUUAUGACAGUGCCGCUUGACACAGUGCUGGGAUUUUUCCAG---------CACCUACU
.((((.(((((((.......))--.)))....((((.((((((......))))))))))....))))))(((((((((...))))))---------)))..... ( -37.90)
>DroYak_CAF1 4228 93 - 1
UUGUGCUCGGGGACCCUUUUUC--ACCCACUUGGCAUCUGUCAGAUUUAUGACAGUGCCGCUUGACACAGUGCUGGGAUUUUUCCCA---------CACCUUCU
.((((.(((((((.......))--.)))....((((.((((((......))))))))))....))))))(((.(((((....)))))---------)))..... ( -35.40)
>consensus
UUGUGCUCGGGGACCCUUUUUC__ACCCACUUGGCAUCUGUCAGAUUUAUGACAGUGCCGCUUGACACAGUGCUGGGAUUUUUCCAAG______CCCACCUACU
.((((.(((((..............)))....((((.((((((......))))))))))....))))))......(((....)))................... (-19.66 = -20.57 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:48 2006